View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6481_low_6 (Length: 275)

Name: NF6481_low_6
Description: NF6481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6481_low_6
NF6481_low_6
[»] chr5 (7 HSPs)
chr5 (19-263)||(23166844-23167088)
chr5 (19-228)||(31022328-31022537)
chr5 (19-224)||(31477339-31477543)
chr5 (28-243)||(1684313-1684527)
chr5 (45-234)||(23927072-23927262)
chr5 (19-124)||(28421436-28421539)
chr5 (108-195)||(28068078-28068165)
[»] chr8 (17 HSPs)
chr8 (51-250)||(31247441-31247640)
chr8 (45-233)||(1565433-1565621)
chr8 (19-240)||(1038947-1039168)
chr8 (85-228)||(15604524-15604666)
chr8 (19-250)||(22282068-22282302)
chr8 (145-258)||(24942280-24942396)
chr8 (85-228)||(15612875-15613017)
chr8 (19-190)||(9251551-9251723)
chr8 (86-228)||(21687205-21687346)
chr8 (86-228)||(21691529-21691670)
chr8 (151-232)||(13770693-13770774)
chr8 (146-228)||(9554966-9555047)
chr8 (32-166)||(45503894-45504028)
chr8 (113-195)||(7454726-7454808)
chr8 (113-195)||(18574077-18574159)
chr8 (119-195)||(32009079-32009155)
chr8 (151-195)||(41280907-41280951)
[»] chr1 (9 HSPs)
chr1 (19-250)||(31066282-31066513)
chr1 (44-243)||(14746673-14746871)
chr1 (64-250)||(24106817-24107003)
chr1 (45-234)||(41438663-41438851)
chr1 (34-232)||(23933655-23933854)
chr1 (21-228)||(16517448-16517652)
chr1 (85-228)||(170611-170753)
chr1 (146-228)||(18732386-18732467)
chr1 (151-195)||(22186084-22186128)
[»] scaffold0234 (1 HSPs)
scaffold0234 (45-248)||(862-1066)
[»] chr4 (10 HSPs)
chr4 (58-242)||(34845462-34845646)
chr4 (19-234)||(13033549-13033765)
chr4 (82-234)||(7865520-7865672)
chr4 (82-234)||(7866684-7866836)
chr4 (19-234)||(53446656-53446871)
chr4 (146-228)||(16643583-16643664)
chr4 (18-250)||(16238404-16238635)
chr4 (27-195)||(25239752-25239919)
chr4 (113-195)||(10985773-10985855)
chr4 (48-137)||(14331928-14332017)
[»] chr3 (17 HSPs)
chr3 (58-250)||(9860656-9860848)
chr3 (52-250)||(3750140-3750339)
chr3 (19-245)||(36639602-36639829)
chr3 (21-230)||(15203816-15204024)
chr3 (19-248)||(44451537-44451764)
chr3 (19-230)||(15242835-15243045)
chr3 (20-228)||(11578758-11578965)
chr3 (113-234)||(1694168-1694289)
chr3 (85-226)||(3024629-3024766)
chr3 (90-248)||(4073047-4073205)
chr3 (147-227)||(16841206-16841285)
chr3 (86-234)||(23088824-23088971)
chr3 (151-250)||(36602586-36602686)
chr3 (127-230)||(12901316-12901418)
chr3 (21-171)||(44635829-44635978)
chr3 (146-228)||(10848270-10848351)
chr3 (19-108)||(36602485-36602574)
[»] chr6 (11 HSPs)
chr6 (32-230)||(7099205-7099403)
chr6 (30-242)||(15933429-15933642)
chr6 (79-230)||(8795227-8795378)
chr6 (85-224)||(31344214-31344352)
chr6 (59-230)||(7412376-7412544)
chr6 (60-240)||(6109419-6109602)
chr6 (23-184)||(14480063-14480223)
chr6 (28-190)||(22607781-22607942)
chr6 (58-172)||(10345425-10345538)
chr6 (17-96)||(14467174-14467252)
chr6 (86-195)||(29095050-29095159)
[»] scaffold0233 (1 HSPs)
scaffold0233 (58-248)||(15997-16188)
[»] chr2 (9 HSPs)
chr2 (19-248)||(23150720-23150948)
chr2 (19-248)||(23561977-23562205)
chr2 (45-228)||(25880918-25881100)
chr2 (86-226)||(15327795-15327934)
chr2 (79-248)||(24837634-24837803)
chr2 (45-248)||(5356507-5356711)
chr2 (33-190)||(10886734-10886891)
chr2 (142-190)||(22452908-22452956)
chr2 (19-111)||(12094231-12094324)
[»] chr7 (6 HSPs)
chr7 (57-242)||(11998106-11998289)
chr7 (88-243)||(5632668-5632821)
chr7 (82-208)||(1860833-1860959)
chr7 (59-169)||(28794036-28794143)
chr7 (82-123)||(19028367-19028408)
chr7 (82-123)||(20726228-20726269)
[»] scaffold0023 (1 HSPs)
scaffold0023 (160-226)||(87420-87486)
[»] scaffold1401 (1 HSPs)
scaffold1401 (19-250)||(831-1061)
[»] scaffold0063 (2 HSPs)
scaffold0063 (58-195)||(36785-36921)
scaffold0063 (19-195)||(49193-49368)
[»] scaffold0777 (1 HSPs)
scaffold0777 (79-228)||(4177-4325)
[»] scaffold0042 (1 HSPs)
scaffold0042 (19-68)||(68857-68906)
[»] scaffold0140 (1 HSPs)
scaffold0140 (26-111)||(26596-26682)
[»] scaffold0058 (1 HSPs)
scaffold0058 (113-195)||(1666-1748)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 23167088 - 23166844
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | ||||||    
T  23167088 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaacgtctctttcccacgttcccgcgaatatctcaccagcggttat 23166989  T
Q  119 acttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaagg 218  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23166988 acttccctcgatttcgtaactggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaagg 23166889  T
Q  219 tagaatctctttcacttctaaaccctcattctaaaactctgatga 263  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  23166888 tagaatctttttcacttctaaaccctcattctaaaactctgatga 23166844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 31022328 - 31022537
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctcttt-cccacgttcccgcgaatatctcaccggtggtta 117  Q
    |||||| |||||||||||||||||| |||||||||||   |||||||||||| |||| |  ||||| ||||||||||||| ||||| ||||||  |||||    
T  31022328 cccttccccgcgaggggggtgcacggagcaactgagacctgttcaaacgaacagtaacgtgtctttacccacgttcccgcaaatatatcaccgacggtta 31022427  T
Q  118 tacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaag 217  Q
    ||||||    ||||||||||  | ||| |||||||||||| |||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  31022428 tacttctagtgatttcgtaaccgccagccacacgtgtgcc-ttacaacgactctgcattcacccacctctataaataggaggctcctcgcaacctccaag 31022526  T
Q  218 gtagaatctct 228  Q
    |||||||||||    
T  31022527 gtagaatctct 31022537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 31477339 - 31477543
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttat 118  Q
    ||||||||||| |||||||||| || |||||||||||   ||||||| |||| |||| |  ||||||||||||||||||||||||||||||||||||||     
T  31477339 cccttctccgcaaggggggtgctcggagcaactgagacatgttcaaatgaacagtaacgtttctttcccacgttcccgcgaatatctcaccggtggttac 31477438  T
Q  119 acttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaagg 218  Q
    |||||    ||||||||||  | |||||| |||| |||| ||||| ||||||| ||||||||||||||||| ||||| ||| | || ||| |||||||||    
T  31477439 acttctactgatttcgtaaccgtcagacatacgtttgcc-ttacagcggctctgcattcacccacctctattaataggaggttacttgcagcctccaagg 31477537  T
Q  219 tagaat 224  Q
    ||||||    
T  31477538 tagaat 31477543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 28 - 243
Target Start/End: Original strand, 1684313 - 1684527
Alignment:
Q  28 gcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctc 127  Q
    ||||||||||||||||||||||||||||  |||||||| || |||||| | |||| | |||||||| ||||||| ||||| ||||||||| ||||| | |    
T  1684313 gcgaggggggtgcacgaagcaactgagaccagttcaaatgatctgtaacgtctctct-ccacgttcgcgcgaatctctcatcggtggttacacttctccc 1684411  T
Q  128 gatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctc 227  Q
    |||||||||     |  |||||||||||||||||||||| |||| |||||||||||||||||| | ||    ||| |||||| | ||||||| |||||||    
T  1684412 gatttcgtatcctccgaacacacgtgtgccattacaacgactctgcattcacccacctctatataaagggaactcttcgcaatccccaaggtggaatctc 1684511  T
Q  228 tttcacttctaaaccc 243  Q
    | |||||||| |||||    
T  1684512 tctcacttcttaaccc 1684527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 23927072 - 23927262
Alignment:
Q  45 agcaactgagattagttcaaacgaactgtaaagcctctttc-ccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggca 143  Q
    ||||||||||| | |||||||||||| |||| | ||||||  |||  |||||||||||||||  || |  |||| |||||   |||||| ||||  | |     
T  23927072 agcaactgagacttgttcaaacgaacagtaacgtctctttttccatattcccgcgaatatctttccagcagttacacttcttacgattttgtaaccgccg 23927171  T
Q  144 gacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcact 234  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||  ||| ||||||||||||||| |||||||||    
T  23927172 gacacacgtgtgccattacaacggctctgcattcacccacctttataaataggaggctccctgcagcctccaaggtagaatatctttcact 23927262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 28421436 - 28421539
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttat 118  Q
    |||||||||| ||||||| ||| || |||||||||||  |||||||||||||||||| | ||| | ||||||||||| | ||| ||||  |||||||||     
T  28421436 cccttctccgtgaggggg-tgctcggagcaactgagaccagttcaaacgaactgtaacgtctc-tgcccacgttcccacaaatctctcctcggtggttac 28421533  T
Q  119 acttcc 124  Q
    ||||||    
T  28421534 acttcc 28421539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 28068078 - 28068165
Alignment:
Q  108 ccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatag 195  Q
    |||| ||||| ||||||| |||||||||||  | ||||  || ||||||||||||||||||||| ||  |  ||||||||||||||||    
T  28068078 ccggcggttacacttcccacgatttcgtaaccgccagagccaggtgtgccattacaacggctctgcagccctccacctctataaatag 28068165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 31247441 - 31247640
Alignment:
Q  51 tgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacac 150  Q
    ||||| || |||||| ||||||||| | |||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||  | | |||||||    
T  31247441 tgagactaattcaaatgaactgtaacgtctctttcccatgttcccgcgaatatctcatcggtggttacacttcccccgatttcgtaaccgccggacacac 31247540  T
Q  151 gtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcacttctaaaccctcattct 250  Q
    ||||| ||||||||||| | | || |||||||||||||||||||  | |||||||||| |||||||||||||||||||||||||||||| ||| ||||||    
T  31247541 gtgtgtcattacaacggttgtgcactcacccacctctataaataagaagctcctcgcagcctccaaggtagaatctctttcacttctaatcccccattct 31247640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 45 - 233
Target Start/End: Original strand, 1565433 - 1565621
Alignment:
Q  45 agcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcag 144  Q
    |||||||||||  |||||||||||||||||| | ||||||||||||||||| ||||||||||||  | ||||| |||| |||| ||||||||| || | |    
T  1565433 agcaactgagaccagttcaaacgaactgtaacgtctctttcccacgttcccacgaatatctcacatgcggttacactttcctcaatttcgtaactgtcgg 1565532  T
Q  145 acacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcac 233  Q
    |||||||||||||||||||| | |||| ||||||||||||||||||||||  ||||| ||| || ||||||||||||||||||||||||    
T  1565533 acacacgtgtgccattacaatgactctacattcacccacctctataaatatgaggcttctcacagcctccaaggtagaatctctttcac 1565621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 1038947 - 1039168
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctcttt-cccacgttcccgcgaatatctcaccggtggtta 117  Q
    |||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||| | |||||| |||| ||||| |||||||| |||||| ||||||    
T  1038947 cccttccccgcgaggggggtgcacggagcaacagagactagttcaaacgaactgtaacgtctctttacccatgttcctgcgaatatatcaccgatggtta 1039046  T
Q  118 tacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaag 217  Q
     ||||||  |||||||||||  | |||||||||||||| ||||||||| ||||| ||||||  ||||||||||   |   ||||||||  |  | |||||    
T  1039047 cacttcctccgatttcgtaacagtcagacacacgtgtgtcattacaacagctctgcattcattcacctctatattaatggggctcctcatagtc-ccaag 1039145  T
Q  218 gtagaatctctttcacttctaaa 240  Q
    |||||||||||||||||||||||    
T  1039146 gtagaatctctttcacttctaaa 1039168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 85 - 228
Target Start/End: Complemental strand, 15604666 - 15604524
Alignment:
Q  85 cccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacc 184  Q
    |||| ||||| |||||||||||||||| ||||| |||||   ||||||| ||| || | | |||||||||||| ||||||||||||| ||||||||||||    
T  15604666 cccaagttcctgcgaatatctcaccggcggttacacttcttacgatttcataactgccggtcacacgtgtgcc-ttacaacggctctgcattcacccacc 15604568  T
Q  185 tctataaatagaaggctcctcgcaacctccaaggtagaatctct 228  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||    
T  15604567 tctataaataggaggctccttgcagcctccaaggtagaatctct 15604524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 22282068 - 22282302
Alignment:
Q  19 cccttctccgcgagggggg-tgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttc-ccacgttcccgcgaatatctcaccggtggtt 116  Q
    ||||||||||  ||||||| ||| |||||||||||||||  ||| |||  ||| |||| | ||||||  ||||||||| |||||||||   |||| | ||    
T  22282068 cccttctccgtaaggggggatgctcgaagcaactgagatctgtttaaataaacagtaacgtctctttttccacgttcctgcgaatatcattccggcgatt 22282167  T
Q  117 atacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaa 216  Q
    | ||||| |  ||||||||||  | |||||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||    
T  22282168 acacttctcaagatttcgtaaccgccagacacacgtgtgccattacaacggctctgcatttaccaacctctataaataggaggctcctcgcaacctccaa 22282267  T
Q  217 ggtagaatctctttcact-tctaaaccctcattct 250  Q
    |  ||||| ||| ||||| || || ||||||||||    
T  22282268 gtgagaatatctatcactctcaaatccctcattct 22282302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 145 - 258
Target Start/End: Complemental strand, 24942396 - 24942280
Alignment:
Q  145 acacacgtgtgccattacaacggctcttcattcacccacctc---tataaatagaaggctcctcgcaacctccaaggtagaatctctttcacttctaaac 241  Q
    ||||||||||||||||||||||||||| ||||||||||||||   ||||||||| ||| |||||||| |||||||||||||||||||||||||   ||||    
T  24942396 acacacgtgtgccattacaacggctctgcattcacccacctcctctataaataggaggatcctcgcatcctccaaggtagaatctctttcactctcaaac 24942297  T
Q  242 cctcattctaaaactct 258  Q
    || ||||||||| ||||    
T  24942296 ccccattctaaacctct 24942280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 85 - 228
Target Start/End: Complemental strand, 15613017 - 15612875
Alignment:
Q  85 cccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacc 184  Q
    |||| ||||| | |||||||||||||| ||||| |||||    ||||| |||| || | | |||||||||||| ||||||||||||| ||||||||||||    
T  15613017 cccaagttcctgtgaatatctcaccggcggttacacttcttaggattttgtaactgccggtcacacgtgtgcc-ttacaacggctctgcattcacccacc 15612919  T
Q  185 tctataaatagaaggctcctcgcaacctccaaggtagaatctct 228  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||    
T  15612918 tctataaataggaggctccttgcagcctccaaggtagaatctct 15612875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 9251723 - 9251551
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctcttt-cccacgttcccgcgaatatctcaccggtggtta 117  Q
    ||||||| || |||||||||  ||| |||||||||||  |||||||||| ||||||| | |||||  ||||| |||||||||||  ||| || |||||||    
T  9251723 cccttcttcgtgaggggggtaaacggagcaactgagaccagttcaaacgtactgtaacgtctcttcacccaccttcccgcgaatccctccccagtggtta 9251624  T
Q  118 tacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctata 190  Q
     |||| || |||||||||||| | | | ||| || ||||||||||||||||||| ||||||||||||||||||    
T  9251623 cactttccacgatttcgtaatcgtcggccactcgcgtgccattacaacggctctgcattcacccacctctata 9251551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 21687346 - 21687205
Alignment:
Q  86 ccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacct 185  Q
    |||| |||||||||||||||||| || ||||| |||||    ||||||||||  | |   |||||||||||| ||||||||||||| |||||||||||||    
T  21687346 ccacattcccgcgaatatctcacaggcggttacacttctgctgatttcgtaaacgccgatcacacgtgtgcc-ttacaacggctctgcattcacccacct 21687248  T
Q  186 ctataaatagaaggctcctcgcaacctccaaggtagaatctct 228  Q
     || |||||| |||||||| |||||||||||||||||||||||    
T  21687247 atacaaataggaggctccttgcaacctccaaggtagaatctct 21687205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 21691670 - 21691529
Alignment:
Q  86 ccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacct 185  Q
    |||| |||||||||||||||||| || ||||| |||||    ||||||||||  | |   |||||||||||| ||||||||||||| |||||||||||||    
T  21691670 ccacattcccgcgaatatctcacaggcggttacacttctgctgatttcgtaaacgccgatcacacgtgtgcc-ttacaacggctctgcattcacccacct 21691572  T
Q  186 ctataaatagaaggctcctcgcaacctccaaggtagaatctct 228  Q
     || |||||| |||||||| |||||||||||||||||||||||    
T  21691571 atacaaataggaggctccttgcaacctccaaggtagaatctct 21691529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 13770693 - 13770774
Alignment:
Q  151 gtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttca 232  Q
    |||||||||||||||| |  | ||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||    
T  13770693 gtgtgccattacaacgaccatgcattcacccacctctataaataggagtcttctcgcagcctccaaggtagaatctctttca 13770774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 9554966 - 9555047
Alignment:
Q  146 cacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctct 228  Q
    |||||||||||| ||| ||| ||| | |||| |||||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  9554966 cacacgtgtgcc-ttataacagctttgcatttacccacctctataaataggaggctcctcgcagcctccaaggttgaatctct 9555047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 166
Target Start/End: Complemental strand, 45504028 - 45503894
Alignment:
Q  32 ggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctc-tttcccacgttcccgcgaatatctcaccggtggttatacttccctcgat 130  Q
    ||||||||| || |||||||||||   |||||||||||| | || | ||| ||| |||| |||| || ||||||||||||| ||||| |||||   ||||    
T  45504028 ggggggtgctcggagcaactgagacctgttcaaacgaacagcaacgtctccttttccactttcctgccaatatctcaccggcggttacacttcttacgat 45503929  T
Q  131 ttcgtaattggcagacacacgtgtgccattacaacg 166  Q
    |||||||  | |||||||||||||||| ||||||||    
T  45503928 ttcgtaaccgtcagacacacgtgtgcc-ttacaacg 45503894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 7454726 - 7454808
Alignment:
Q  113 ggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatag 195  Q
    ||||| ||||||| |||||||||||  | ||||  || ||||||||||||||||||||| ||  |  ||||||||||||||||    
T  7454726 ggttacacttcccacgatttcgtaaccgccagagccaggtgtgccattacaacggctctgcagccttccacctctataaatag 7454808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 18574077 - 18574159
Alignment:
Q  113 ggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatag 195  Q
    ||||| ||||||| |||||||||||  | ||||  || ||||||||||||||||||||| ||  |  ||||||||||||||||    
T  18574077 ggttacacttcccacgatttcgtaaccgccagagccaggtgtgccattacaacggctctgcagccctccacctctataaatag 18574159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 32009079 - 32009155
Alignment:
Q  119 acttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatag 195  Q
    ||||||| |||||||||||  | ||||  || ||||||||||||||||||||| ||  |  ||||||||||||||||    
T  32009079 acttcccacgatttcgtaaccgccagagtcaggtgtgccattacaacggctctacagccctccacctctataaatag 32009155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 41280907 - 41280951
Alignment:
Q  151 gtgtgccattacaacggctcttcattcacccacctctataaatag 195  Q
    ||||||||||||||||||||| || ||  ||||||||||||||||    
T  41280907 gtgtgccattacaacggctctgcagtcctccacctctataaatag 41280951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 31066282 - 31066513
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttat 118  Q
    |||||||||||| ||||||||| || ||||||||||| | ||||||||||||  ||| | ||||||||||||||| ||||||||||||||||| |||||     
T  31066282 cccttctccgcg-ggggggtgctcggagcaactgagacttgttcaaacgaacaataatgtctctttcccacgttctcgcgaatatctcaccggcggttac 31066380  T
Q  119 acttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaagg 218  Q
    |||| ||  ||||||||||  |   ||| ||| |||||||||||| || |||| ||||||||||||||||||||||| ||||||||| ||||||||| ||    
T  31066381 actttccctgatttcgtaaccgctggacccacatgtgccattacagcgactctacattcacccacctctataaataggaggctcctcacaacctccaggg 31066480  T
Q  219 tagaatctctttcact-tctaaaccctcattct 250  Q
    |||||||||||||||| || || ||||||||||    
T  31066481 tagaatctctttcactctcaaacccctcattct 31066513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 44 - 243
Target Start/End: Original strand, 14746673 - 14746871
Alignment:
Q  44 aagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggca 143  Q
    |||||||| |||  |||||||||||||||||| | |||||||| ||||||||  |||||||| ||||||||||| |||| |   ||||| ||||  | |     
T  14746673 aagcaactaagaccagttcaaacgaactgtaacgtctctttcc-acgttcccatgaatatcttaccggtggttacactttctctgattttgtaaccgtcg 14746771  T
Q  144 gacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcacttctaaaccc 243  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||    
T  14746772 gacacacgtgtgtcattacaacggctctgcattcacccacctctataaataagaggctcctcgcaaccttcaaggtagaatctctttcacttctaaaccc 14746871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 64 - 250
Target Start/End: Original strand, 24106817 - 24107003
Alignment:
Q  64 aacgaactgtaaagcctcttt-cccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattac 162  Q
    ||||||||||||   |||||| ||||||||||||| |||||||||||||  |||  || |||| |||||||||||| | | || ||||||||||||||||    
T  24106817 aacgaactgtaacctctctttacccacgttcccgcaaatatctcaccggcagtttcacgtcccccgatttcgtaatcgtcggatacacgtgtgccattac 24106916  T
Q  163 aacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcacttctaaaccctcattct 250  Q
    || |||||| |||||| ||||||||||| | || |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||    
T  24106917 aa-ggctctgcattcatccacctctatataaaggaggctcatcgcaacctccaaggtagaatttctttcacttctaaacccccattct 24107003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 45 - 234
Target Start/End: Complemental strand, 41438851 - 41438663
Alignment:
Q  45 agcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcag 144  Q
    |||||||||||   |||||||||||  |||| | |||||||| |||||||| |||||||||||| |||||||| |||||    ||||||||||  | | |    
T  41438851 agcaactgagacatgttcaaacgaatagtaacgtctctttccaacgttcccacgaatatctcactggtggttacacttctactgatttcgtaaccgtcgg 41438752  T
Q  145 acacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcact 234  Q
    ||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||  ||||| ||||| ||||||||||||| |||||    
T  41438751 acacacgtgtgcc-ttacaacggctctacattcacccacgtctataaataggaggcttttcgcagcctccgaggtagaatctctctcact 41438663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 23933655 - 23933854
Alignment:
Q  34 ggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctcttt-cccacgttcccgcgaatatctcaccggtggttatacttccctcgattt 132  Q
    ||||||| || |||||||  || | ||||||||||||  ||| | |||||| |||| |||||||| |||| |||| ||  | ||| |||||   ||||||    
T  23933655 ggggtgctcgtagcaactatgacttgttcaaacgaacaataacgtctcttttcccatgttcccgcaaataactcatcgacgattacacttcttacgattt 23933754  T
Q  133 cgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttca 232  Q
    |||||| | | ||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||||| | ||||||||||||||| |||||    
T  23933755 cgtaatcgtcggacacacgtgtgccattacaatggctctgcattcacccacttctataaataggaggctcctcgcagcttccaaggtagaatctttttca 23933854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 16517652 - 16517448
Alignment:
Q  21 cttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctcttt-cccacgttcccgcgaatatctcaccggtggttata 119  Q
    |||||||||||||||| |   || |||||||||||   |||||||||||| |||| | |||||| ||||| ||||  ||||||||| | ||| ||||| |    
T  16517652 cttctccgcgagggggct---cggagcaactgagacctgttcaaacgaacagtaacgtctctttacccacattccgacgaatatcttatcggcggttaca 16517556  T
Q  120 cttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggt 219  Q
    ||||    ||||||||||  |   | |||||||||||| ||||||||||||| |||| ||||||||||| |||||| ||||||||||| |||||||||||    
T  16517555 cttctgctgatttcgtaaccgctggtcacacgtgtgcc-ttacaacggctctgcatttacccacctctacaaataggaggctcctcgctacctccaaggt 16517457  T
Q  220 agaatctct 228  Q
    |||||||||    
T  16517456 agaatctct 16517448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 228
Target Start/End: Original strand, 170611 - 170753
Alignment:
Q  85 cccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacc 184  Q
    |||||||||||| |||||||||||| | ||||| ||||     ||||||||||  | | | ||||| |||||| ||||||||||||| |||||| |||||    
T  170611 cccacgttcccgtgaatatctcacctgcggttacacttttgctgatttcgtaaccgccggccacacatgtgcc-ttacaacggctctgcattcatccacc 170709  T
Q  185 tctataaatagaaggctcctcgcaacctccaaggtagaatctct 228  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||    
T  170710 tctataaataggaggctcatcgcagcctccaaggtagaatctct 170753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 18732467 - 18732386
Alignment:
Q  146 cacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctct 228  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||| ||| ||||    
T  18732467 cacacgtgtgcc-ttacaacagctctgcattcacccacctctataaataggaggctcctcgcagcctccaaggttgaacctct 18732386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 22186084 - 22186128
Alignment:
Q  151 gtgtgccattacaacggctcttcattcacccacctctataaatag 195  Q
    ||||||||||||||||||||| ||  || ||||||||||||||||    
T  22186084 gtgtgccattacaacggctctgcagccatccacctctataaatag 22186128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 45 - 248
Target Start/End: Original strand, 862 - 1066
Alignment:
Q  45 agcaactgagattagttcaaa-cgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggca 143  Q
    ||||||||| | ||||||||| |||||| ||| | ||||||||||||||| ||||||||||||||||  ||||| |||||||  ||||||  || || |     
T  862 agcaactgaaactagttcaaaacgaactataatgtctctttcccacgttctcgcgaatatctcaccgacggttacacttccccggatttcaaaactgtcg 961  T
Q  144 gacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcacttctaaaccc 243  Q
    ||| ||| |||||||||||||||||||| ||||||||||||| ||||||||  ||||||| | || |||||||||||||||||||||||||| |||||||    
T  962 gacgcacatgtgccattacaacggctctacattcacccacctttataaataagaggctccccacagcctccaaggtagaatctctttcacttataaaccc 1061  T
Q  244 tcatt 248  Q
    |||||    
T  1062 tcatt 1066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 58 - 242
Target Start/End: Original strand, 34845462 - 34845646
Alignment:
Q  58 agttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgcc 157  Q
    |||||||| ||||| ||| | ||||||||||| ||||||| ||||||||||||| ||||| ||||||| |||||||||||  | |||||||| |||||||    
T  34845462 agttcaaatgaactttaacgtctctttcccacattcccgcaaatatctcaccggcggttacacttcccacgatttcgtaaccgtcagacacatgtgtgcc 34845561  T
Q  158 attacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcacttctaaacc 242  Q
    ||||||||| |||| |||||||||||||||||| | ||  |||||||||||  | |||||||||||||||| |||||||||||||    
T  34845562 attacaacgactctgcattcacccacctctatataaagggggctcctcgcagtccccaaggtagaatctctctcacttctaaacc 34845646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 13033549 - 13033765
Alignment:
Q  19 cccttctccgcgagggggg-tgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggtta 117  Q
    |||||||||| |||||||| ||| || |||||||||||    ||||||||||| |||| | || |||| |||||||||||||||||||||| |  |||||    
T  13033549 cccttctccgtgagggggggtgctcgtagcaactgagacctattcaaacgaacagtaacgtctatttctcacgttcccgcgaatatctcactgacggtta 13033648  T
Q  118 tacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaag 217  Q
     ||||||| |||||||||||  | | ||||||||||||||||||||| |||||| | |||| |||||| ||||||||| |||||  ||||| ||||||||    
T  13033649 cacttcccccgatttcgtaaccgccggacacacgtgtgccattacaatggctctgctttcagccacctttataaataggaggcttttcgcagcctccaag 13033748  T
Q  218 gtagaatctctttcact 234  Q
    |||||||||||||||||    
T  13033749 gtagaatctctttcact 13033765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 7865520 - 7865672
Alignment:
Q  82 tttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcaccc 181  Q
    |||||||||||||||||||||||||||  |  ||||||||||    ||||||||||    ||||||||||||||||||||||||| || | |||||||||    
T  7865520 tttcccacgttcccgcgaatatctcactagcagttatacttcttatgatttcgtaaccaacagacacacgtgtgccattacaacgactatgcattcaccc 7865619  T
Q  182 acctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcact 234  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||||||||    
T  7865620 acctctataaatagcaggctccctacaacctccaaggtagaatctctttcact 7865672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 7866684 - 7866836
Alignment:
Q  82 tttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcaccc 181  Q
    |||||||||||||||||||||||||||  |  ||||||||||    ||||||||||    ||||||||||||||||||||||||| || | |||||||||    
T  7866684 tttcccacgttcccgcgaatatctcactagcagttatacttcttatgatttcgtaaccaacagacacacgtgtgccattacaacgactatgcattcaccc 7866783  T
Q  182 acctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcact 234  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||||||||    
T  7866784 acctctataaatagcaggctccctacaacctccaaggtagaatctctttcact 7866836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 53446871 - 53446656
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttat 118  Q
    ||||| ||||| |||||| ||| |  |||||||||||   |||||||| |||  ||| | ||||||||||||||||| | ||||||||||||    |||     
T  53446871 cccttatccgcaagggggatgctcagagcaactgagacatgttcaaacaaacaataacgtctctttcccacgttccctcaaatatctcaccgtcaattac 53446772  T
Q  119 acttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaagg 218  Q
    ||||| | ||||||||||| || | |||||||||||||||||||| ||||||| ||||||||||||||||||||||| | | | ||| || |||||||||    
T  53446771 acttctcacgatttcgtaactgccggacacacgtgtgccattacagcggctctacattcacccacctctataaataggatgtttctcccagcctccaagg 53446672  T
Q  219 tagaatctctttcact 234  Q
    |||||||| |||||||    
T  53446671 tagaatctttttcact 53446656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 16643583 - 16643664
Alignment:
Q  146 cacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctct 228  Q
    |||||||||||| |||||| |||||| ||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||||    
T  16643583 cacacgtgtgcc-ttacaatggctctgcattcacccacatctataaataggaggctcctcgcagcctccaagggagaatctct 16643664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 16238635 - 16238404
Alignment:
Q  18 acccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctcttt-cccacgttcccgcgaatatctcaccggtggtt 116  Q
    ||||||||||||||||||| ||| || ||||  |||||   |||||||| ||| ||||   |||||| ||||||||||||||||||||||||||   |||    
T  16238635 acccttctccgcgaggggg-tgctcggagcatttgagacctgttcaaacaaacagtaacatctctttacccacgttcccgcgaatatctcaccgtcagtt 16238537  T
Q  117 atacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaa 216  Q
    | ||| | |  | ||||||||  | | | |||| ||||||| |||||| |||||| |||||||| |||||||||||||| |||||||| | |  ||||||    
T  16238536 acactcctcctggtttcgtaaccgccggtcacatgtgtgcc-ttacaatggctctgcattcacctacctctataaataggaggctccttgtaggctccaa 16238438  T
Q  217 ggtagaatctctttcacttctaaaccctcattct 250  Q
    ||||||||||||  ||||   |||||||||||||    
T  16238437 ggtagaatctctcacactctcaaaccctcattct 16238404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 25239919 - 25239752
Alignment:
Q  27 cgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccct 126  Q
    ||||||||||||||||| | | |  |||| | ||||||||||||   |||| |||||||| |||||||||| |  | ||||| || ||||| |||||||     
T  25239919 cgcgaggggggtgcacggaacgaaagagactggttcaaacgaaccccaaagtctctttcc-acgttcccgcaataaactcacaggcggttacacttccca 25239821  T
Q  127 cgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatag 195  Q
    | |||||||||  | ||||   | ||||||||||||||||||||| ||  |  ||||||||||||||||    
T  25239820 caatttcgtaaccgtcagagtaaggtgtgccattacaacggctctgcagccctccacctctataaatag 25239752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 10985773 - 10985855
Alignment:
Q  113 ggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatag 195  Q
    ||||| ||||||| |||||||||||  |  |||  || ||||||||||||||||||||| ||  || ||||||||||||||||    
T  10985773 ggttacacttcccacgatttcgtaaccgcgagagccaggtgtgccattacaacggctctgcagccatccacctctataaatag 10985855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 14331928 - 14332017
Alignment:
Q  48 aactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaa 137  Q
    ||||||||  ||||| |||||||||||| | |||||||||| ||| | | | || ||||||| | |||||||| |||| |||||||||||    
T  14331928 aactgagaccagttcgaacgaactgtaacgtctctttcccatgtttctgtgtatctctcaccagcggttatacatcccacgatttcgtaa 14332017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 58 - 250
Target Start/End: Original strand, 9860656 - 9860848
Alignment:
Q  58 agttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgcc 157  Q
    |||||||||| | |||||   |||||||||| ||||||||||||||||||||||  |||| ||||||| |||||| ||||  |   |||||||||||| |    
T  9860656 agttcaaacggattgtaacatctctttcccatgttcccgcgaatatctcaccggcagttacacttcccccgattttgtaaccgttggacacacgtgtgtc 9860755  T
Q  158 attacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcacttctaaaccctcattct 250  Q
    ||||| ||| |||| |||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||| |||||||||||||    
T  9860756 attactacgactctgcattcacccacctctataaatagaagactccccgcagcctccaaggtataatctctttcacttcaaaaccctcattct 9860848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 52 - 250
Target Start/End: Original strand, 3750140 - 3750339
Alignment:
Q  52 gagattagttcaaacgaactgtaaagcctcttt-cccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacac 150  Q
    |||| ||||| ||||||||||||| | |||||| |||||||||||||||||||||||| || ||||| |||| || |||||| ||||    | |||||||    
T  3750140 gagactagttaaaacgaactgtaacgtctctttacccacgttcccgcgaatatctcactggcggttacactttccacgattttgtaaccatcggacacac 3750239  T
Q  151 gtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcacttctaaaccctcattct 250  Q
    ||||||||||||| |  ||||||||||||||||||||||| | |  ||| |||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  3750240 gtgtgccattacagcacctcttcattcacccacctctatataaatgaggttcctcgcagcctccaaggtagaatctctttcacttctaaacccccattct 3750339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 36639829 - 36639602
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctcttt-cccacgttcccgcgaatatctcaccggtggtta 117  Q
    |||||||| ||||||||| ||| |||||||||| |||   |||||||||||| |||| | |||||| |||||||| ||||||||||||| || |  |||     
T  36639829 cccttctctgcgaggggg-tgctcgaagcaactaagacatgttcaaacgaaccgtaacgtctcttttcccacgtttccgcgaatatctccccagccgttg 36639731  T
Q  118 tacttccc-tcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaa 216  Q
     ||||||| ||||||| ||||  | | |||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| ||||| |||| ||    
T  36639730 cacttcccctcgattttgtaaccgtcggacacacgtgtgccattacaacggctctgcattcacccacctctataaataggagcctcatcgcagcctctaa 36639631  T
Q  217 ggtagaatctctttcacttctaaaccctc 245  Q
    |||||||| |||||||||||| |||||||    
T  36639630 ggtagaatttctttcacttctcaaccctc 36639602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 15203816 - 15204024
Alignment:
Q  21 cttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatac 120  Q
    ||||||||||||||| ||||||| |||||||||||    ||||||||||| ||||   ||||||||||||||||| ||||||||||||||  ||||| ||    
T  15203816 cttctccgcgaggggtgtgcacggagcaactgagacctattcaaacgaacagtaacatctctttcccacgttcccacgaatatctcaccgacggttacac 15203915  T
Q  121 ttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggta 220  Q
    |||    ||||||||||    | |||||||||||||| ||| ||||||||| ||||||||||||||||||||||  |||||||| | |||||||||||||    
T  15203916 ttctactgatttcgtaaccaccggacacacgtgtgcc-ttaaaacggctctgcattcacccacctctataaatatgaggctcctggaaacctccaaggta 15204014  T
Q  221 gaatctcttt 230  Q
    ||||||||||    
T  15204015 gaatctcttt 15204024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 44451537 - 44451764
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttat 118  Q
    ||||| ||||||||||||||||| | |||||||||||  |||||||||||||||||| | |||| ||| | ||||||  |||| |||||||| ||||||     
T  44451537 cccttgtccgcgaggggggtgcaggtagcaactgagaccagttcaaacgaactgtaacgtctctctcc-atgttcccaggaatctctcaccgatggttac 44451635  T
Q  119 acttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaagg 218  Q
    ||||||| | |||| ||||  | | |||||| ||||||||||||||||||||| |||||||||||||||||| | ||  | |||||||||| | ||||||    
T  44451636 acttccccctattttgtaaccgtcggacacatgtgtgccattacaacggctctgcattcacccacctctatataaaggggactcctcgcaatc-ccaagg 44451734  T
Q  219 tagaatctctttcacttctaaaccctcatt 248  Q
    |||||||||| |||||||| ||||| ||||    
T  44451735 tagaatctctctcacttcttaacccccatt 44451764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 15242835 - 15243045
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttat 118  Q
    ||||||||||||||| ||||||| | |||||||||||   |||||||||||| ||||   ||||||||||||||||| ||||||||||||||  |||||     
T  15242835 cccttctccgcgaggagggtgcatggagcaactgagacctgttcaaacgaacagtaacatctctttcccacgttcccacgaatatctcaccgacggttac 15242934  T
Q  119 acttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaagg 218  Q
    |||||     |||||||||  | | |||||||||||||| ||| ||||||||| ||||||||||||||||||||||  ||| ||||| || |||||||||    
T  15242935 acttctactaatttcgtaaccgccggacacacgtgtgcc-ttaaaacggctctgcattcacccacctctataaatatgaggttcctcacagcctccaagg 15243033  T
Q  219 tagaatctcttt 230  Q
    ||||||||||||    
T  15243034 tagaatctcttt 15243045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 11578758 - 11578965
Alignment:
Q  20 ccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttata 119  Q
    ||||||||||||||||||| |||||||||||| |||  ||||||||||||||| || |  |||||||||||||||||||||| |||||| || ||||| |    
T  11578758 ccttctccgcgaggggggtacacgaagcaactaagaccagttcaaacgaactgcaatgtttctttcccacgttcccgcgaatctctcactggcggttaca 11578857  T
Q  120 cttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggt 219  Q
    |||||| |||||| ||||      ||||||||||| ||| |||||||||||| ||| |||||||||||||| | ||  | |||||||||| | || ||||    
T  11578858 cttcccacgattttgtaaccacgggacacacgtgtacca-tacaacggctctacatacacccacctctatataaaggggactcctcgcaatccccgaggt 11578956  T
Q  220 agaatctct 228  Q
    |||||||||    
T  11578957 agaatctct 11578965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 1694168 - 1694289
Alignment:
Q  113 ggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacct 212  Q
    ||||| ||||||||||||||| |||    | ||||||| |||||||||||||||||||| |||||||||||| |||||||||| |||||||||| | |||    
T  1694168 ggttacacttccctcgatttcataaccaccggacacacatgtgccattacaacggctctgcattcacccaccactataaatagcaggctcctcgtagcct 1694267  T
Q  213 ccaaggtagaatctctttcact 234  Q
    |||||  |||||||||||||||    
T  1694268 ccaagagagaatctctttcact 1694289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 226
Target Start/End: Complemental strand, 3024766 - 3024629
Alignment:
Q  85 cccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacc 184  Q
    ||||||||| ||||||||||||||||| ||||| |||| |   ||||||||||| |   | || ||||||||| |||||||||||||  ||||||| |||    
T  3024766 cccacgttctcgcgaatatctcaccggcggttacacttac---gatttcgtaatcgctggtcaaacgtgtgcc-ttacaacggctctggattcaccaacc 3024671  T
Q  185 tctataaatagaaggctcctcgcaacctccaaggtagaatct 226  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  3024670 tctataaataggaggctcctcgcagcctccaaggtagaatct 3024629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 90 - 248
Target Start/End: Original strand, 4073047 - 4073205
Alignment:
Q  90 gttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctat 189  Q
    ||||| |||||||||| | ||| ||||| |||||  |||||||| ||| || |  |||||||||||||||||||||| || | |||| || | |||||||    
T  4073047 gttcctgcgaatatcttatcggcggttacacttctttcgatttcataactgacgaacacacgtgtgccattacaacgactttgcatttactctcctctat 4073146  T
Q  190 aaatagaaggctcctcgcaacctccaaggtagaatctctttcacttctaaaccctcatt 248  Q
    |||||| |||||||||| | ||| ||||||||||||||||| | |||| ||||||||||    
T  4073147 aaataggaggctcctcgaagccttcaaggtagaatctctttaatttctcaaccctcatt 4073205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 16841206 - 16841285
Alignment:
Q  147 acacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctc 227  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||    
T  16841206 acacgtgtgcc-ttacaacggctctgcattcaccctcctctataaatagaaggctcatcgcagcctccaaggtagaatctc 16841285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 86 - 234
Target Start/End: Original strand, 23088824 - 23088971
Alignment:
Q  86 ccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacct 185  Q
    ||||||||||| || ||||||||||| ||||| |||||    ||||||||||  | | |||||||||||||||||| |||| |||  |||||||| ||||    
T  23088824 ccacgttcccgtga-tatctcaccggcggttacacttctgctgatttcgtaaccgtcggacacacgtgtgccattagaacgactcaacattcacctacct 23088922  T
Q  186 ctataaatagaaggctcctcgcaacctccaaggtagaatctctttcact 234  Q
    |||||||||| |||||||| | | ||| |||||||||||||||||||||    
T  23088923 ctataaataggaggctcctggtagcctacaaggtagaatctctttcact 23088971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 250
Target Start/End: Original strand, 36602586 - 36602686
Alignment:
Q  151 gtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcacttct-aaaccctcattc 249  Q
    ||||| ||||||||||||||| |||||||||||  |||||||||| |||||||||||| |||||||| ||||||||||||  | ||| ||||||||||||    
T  36602586 gtgtgtcattacaacggctctgcattcacccactgctataaataggaggctcctcgcagcctccaagatagaatctcttttccctctaaaaccctcattc 36602685  T
Q  250 t 250  Q
    |    
T  36602686 t 36602686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 12901316 - 12901418
Alignment:
Q  127 cgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatct 226  Q
    |||||||||||  | ||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||| |||| |||| | |||||    
T  12901316 cgatttcgtaaccgccagtcacacgtgtgcc-ttacaacggttctgcattcacccacctctataaataggaggctcctcgcagcctcgaaggcataatct 12901414  T
Q  227 cttt 230  Q
    ||||    
T  12901415 cttt 12901418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 44635978 - 44635829
Alignment:
Q  21 cttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatac 120  Q
    |||| |||||| |||| || ||| |||||  |||| |||||||||||||||  || | ||||| | ||||||||||||||| |||| | || ||||| ||    
T  44635978 cttccccgcgaaggggatgtacggagcaagcgagactagttcaaacgaactacaacgtctctt-cgcacgttcccgcgaatctctctctggcggttacac 44635880  T
Q  121 ttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctct 171  Q
    ||||| |||||||||||  | | ||| ||||||||||||||||||||||||    
T  44635879 ttcccacgatttcgtaaccgacggactcacgtgtgccattacaacggctct 44635829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 10848270 - 10848351
Alignment:
Q  146 cacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctct 228  Q
    |||||||||||| ||||||||||||| ||||||||||||| ||||||||| |||||  ||||| |||| | ||||||||||||    
T  10848270 cacacgtgtgcc-ttacaacggctctgcattcacccacctttataaataggaggcttatcgcagcctcaagggtagaatctct 10848351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 36602485 - 36602574
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcac 108  Q
    |||||||||||||||||||||| |  || ||||||||   ||| ||| |||| |||| | |||||||||||||||||||| |||||||||    
T  36602485 cccttctccgcgaggggggtgctcagagaaactgagacatgtttaaaggaacagtaacgtctctttcccacgttcccgcggatatctcac 36602574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 32 - 230
Target Start/End: Original strand, 7099205 - 7099403
Alignment:
Q  32 ggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatt 131  Q
    ||||||||| || |||||||||||   ||||||||||||  ||| | ||||||||||||||| ||||||||||||||||  ||||| ||||  | |||||    
T  7099205 ggggggtgctcggagcaactgagacctgttcaaacgaacaataacgtctctttcccacgttctcgcgaatatctcaccgacggttacacttttcccgatt 7099304  T
Q  132 tcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctcttt 230  Q
    ||||||  |   ||| ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  7099305 tcgtaaccgcgggacccacatgtgccattacaacggctctgcattcacccacctctataaataggaggcttctcgcaacctccaaggtagattctcttt 7099403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 242
Target Start/End: Original strand, 15933429 - 15933642
Alignment:
Q  30 gaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctcttt-cccacgttcccgcgaatatctcaccggtggttatacttccctcg 128  Q
    |||||||||||||| |||||||||||  |||||||| |||||||||   |||||| |||| |||||| |||||||||||| || ||||| ||||||  ||    
T  15933429 gaggggggtgcacggagcaactgagaccagttcaaatgaactgtaacatctctttacccatgttcccacgaatatctcacaggcggttacacttcctacg 15933528  T
Q  129 atttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctct 228  Q
    |||||||||  |   || |||| |||||||||||||||||| | |||||||||||||||||| | |  |||||||||||| ||| |||||||||||||||    
T  15933529 atttcgtaaccgctggatacacttgtgccattacaacggctatgcattcacccacctctatataaaagaggctcctcgcagccttcaaggtagaatctct 15933628  T
Q  229 ttcacttctaaacc 242  Q
    ||||||||||||||    
T  15933629 ttcacttctaaacc 15933642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 8795378 - 8795227
Alignment:
Q  79 ctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattca 178  Q
    ||||||||||||||| ||||||||||||||||  ||||| ||||  | |||||||||||  |   ||| ||| |||||||||||||||||||| ||||||    
T  8795378 ctctttcccacgttctcgcgaatatctcaccgacggttacacttttcccgatttcgtaaccgcgggacccacatgtgccattacaacggctctgcattca 8795279  T
Q  179 cccacctctataaatagaaggctcctcgcaacctccaaggtagaatctcttt 230  Q
    ||||||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  8795278 cccacctctataaataggaggcttctcgcaacctccaaggtagattctcttt 8795227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 85 - 224
Target Start/End: Original strand, 31344214 - 31344352
Alignment:
Q  85 cccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacc 184  Q
    |||||||||||| |||||||||||||| ||||| |||||   |||||||||||  | | | |||||||||||| ||||||||||||| ||||||||||||    
T  31344214 cccacgttcccgtgaatatctcaccggcggttacacttcttacgatttcgtaaccgtcggtcacacgtgtgcc-ttacaacggctctgcattcacccacc 31344312  T
Q  185 tctataaatagaaggctcctcgcaacctccaaggtagaat 224  Q
    ||||||||||| ||||||||| ||||||||||| ||||||    
T  31344313 tctataaataggaggctcctcacaacctccaagatagaat 31344352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 230
Target Start/End: Complemental strand, 7412544 - 7412376
Alignment:
Q  59 gttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgcca 158  Q
    |||||||||||  |||| | || ||||||| |||||||||||||||||||||| ||||| |||||   |||||||||||  ||| ||||||| ||||||     
T  7412544 gttcaaacgaatagtaacgtctatttcccaagttcccgcgaatatctcaccggcggttacacttcttacgatttcgtaaccggcggacacacatgtgcc- 7412446  T
Q  159 ttacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctcttt 230  Q
    |||||||  |||| ||||||||||||||||| ||||  |||||||||||| || ||||||| ||||||||||    
T  7412445 ttacaacaactctgcattcacccacctctatgaataagaggctcctcgcagcc-ccaaggt-gaatctcttt 7412376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 6109419 - 6109602
Alignment:
Q  60 ttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccat 159  Q
    ||||||||||||||||   |||||| |||||||| ||||||| |||| |||   |||| |||| || |||||||||||  | |||||||| |||||| ||    
T  6109419 ttcaaacgaactgtaacatctcttttccacgttctcgcgaatctctcgccgacagttacactttccacgatttcgtaaccgccagacacatgtgtgctat 6109518  T
Q  160 ta---caacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcacttctaaa 240  Q
    ||   |||||| ||| |||||||||||||||||| | ||  | |||||||||  | ||||||||||| |||| |||||||||||    
T  6109519 tactgcaacggttctgcattcacccacctctatataaaggggactcctcgcagtccccaaggtagaacctctctcacttctaaa 6109602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 14480223 - 14480063
Alignment:
Q  23 tctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatactt 122  Q
    ||||||||| | |||||||| ||||||  ||||  ||||||||||||||| || ||||||| |||||||||||| || | |||| |||  ||||| | ||    
T  14480223 tctccgcgatgtgggtgcacaaagcaaaagagaccagttcaaacgaactgcaacgcctctt-cccacgttcccgtgagtttctctccgacggttacattt 14480125  T
Q  123 ccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacc 184  Q
     || ||||||||||| || | ||||||||||||||||||||| |||||| ||  ||||||||    
T  14480124 tccacgatttcgtaactgccggacacacgtgtgccattacaatggctctgcagccacccacc 14480063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 22607942 - 22607781
Alignment:
Q  28 gcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctc 127  Q
    ||||||||||||| || || ||  |||| ||||||||||||||||||| | |||||||| |||||||||||||| |||| |||| | ||| ||||||| |    
T  22607942 gcgaggggggtgctcggagtaatagagactagttcaaacgaactgtaacgtctctttccaacgttcccgcgaatctctccccggcgattacacttcccac 22607843  T
Q  128 gatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctata 190  Q
    ||||| ||||  | |   ||||  |||||| ||||||||||||| ||  ||||||||||||||    
T  22607842 gattttgtaaccgtcgagcacatttgtgcc-ttacaacggctctgcaaacacccacctctata 22607781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 172
Target Start/End: Complemental strand, 10345538 - 10345425
Alignment:
Q  58 agttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgcc 157  Q
    |||||||||||| ||||| | |||||||||| |||||| | ||| |||| |||| ||||| |||| || | ||||| |||| | ||| |||||||||| |    
T  10345538 agttcaaacgaattgtaatgtctctttcccatgttccccccaatctctccccggcggttaaactttccacaatttcctaatcgtcaggcacacgtgtgac 10345439  T
Q  158 attacaacggctctt 172  Q
     ||||||||||||||    
T  10345438 -ttacaacggctctt 10345425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 14467252 - 14467174
Alignment:
Q  17 cacccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccg 96  Q
    ||||| |||||||||||||||||||| ||||||  ||||  ||||||||||||||  || | ||| ||||||||||||||    
T  14467252 cacccgtctccgcgaggggggtgcacaaagcaaaagagaccagttcaaacgaactacaacgtctc-ttcccacgttcccg 14467174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 29095050 - 29095159
Alignment:
Q  86 ccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacct 185  Q
    |||||||||||| |  | ||||| || ||||| ||||||| |||||||||||  | ||||   | ||||||||||||||||||||| ||  |  ||||||    
T  29095050 ccacgttcccgcaataaactcacaggcggttacacttcccacgatttcgtaaccgtcagagttaggtgtgccattacaacggctctgcagccctccacct 29095149  T
Q  186 ctataaatag 195  Q
    ||||||||||    
T  29095150 ctataaatag 29095159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 58 - 248
Target Start/End: Original strand, 15997 - 16188
Alignment:
Q  58 agttcaaacgaactgtaaagcctctttc-ccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgc 156  Q
    |||||||||||||||||| |  |||||  |||||||||| ||||||||||||||| ||||| ||||||| |||||||||||  | |  ||||||||||||    
T  15997 agttcaaacgaactgtaacgtatctttatccacgttcccacgaatatctcaccggcggttacacttcccacgatttcgtaaccgccgaacacacgtgtgc 16096  T
Q  157 cattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcacttctaaaccctcatt 248  Q
    |||||||| || ||| |||||||| |||||||||||||| |||||||||||| ||||||||||| ||||| | | |||||||||||| ||||    
T  16097 cattacaaaggatctacattcaccaacctctataaataggaggctcctcgcagcctccaaggtataatctttctgacttctaaacccccatt 16188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 23150948 - 23150720
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttat 118  Q
    |||||| ||| |||||||||||| |||||||||||||   |||||||| || ||||| | |||||||||||||||||| |||| |||||| || ||||      
T  23150948 cccttccccgagaggggggtgcatgaagcaactgagacccgttcaaactaaatgtaacgtctctttcccacgttcccgtgaatctctcactggaggtttc 23150849  T
Q  119 acttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaagg 218  Q
    ||||||| |||||||||||  | | ||||||||||||||| |||||||||||| ||| |||||||||||||| | ||    ||||||| |  | ||||||    
T  23150848 acttcccacgatttcgtaaccgtcggacacacgtgtgcca-tacaacggctctacatacacccacctctatataaagggtactcctcgtagtccccaagg 23150750  T
Q  219 tagaatctctttcacttctaaaccctcatt 248  Q
    |||||||| | ||| |||| ||||||||||    
T  23150749 tagaatctttgtcatttcttaaccctcatt 23150720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 23562205 - 23561977
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttat 118  Q
    |||||| ||| |||||||||||| |||||||||||||   |||||||| || ||||| | |||||||||||||||||| |||| |||||| || ||||      
T  23562205 cccttccccgagaggggggtgcatgaagcaactgagacccgttcaaactaaatgtaacgtctctttcccacgttcccgtgaatctctcactggaggtttc 23562106  T
Q  119 acttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaagg 218  Q
    ||||||| |||||||||||  | | ||||||||||||||| |||||||||||| ||| |||||||||||||| | ||    ||||||| |  | ||||||    
T  23562105 acttcccacgatttcgtaaccgtcggacacacgtgtgcca-tacaacggctctacatacacccacctctatataaagggtactcctcgtagtccccaagg 23562007  T
Q  219 tagaatctctttcacttctaaaccctcatt 248  Q
    |||||||| | ||| |||| ||||||||||    
T  23562006 tagaatctttgtcatttcttaaccctcatt 23561977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 45 - 228
Target Start/End: Original strand, 25880918 - 25881100
Alignment:
Q  45 agcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcag 144  Q
    |||||| |||||  |||||||||||| |||| | |||||||||||||||||||||||||||||| || ||||| |||||    ||||| || |  | | |    
T  25880918 agcaacagagatatgttcaaacgaacagtaacgtctctttcccacgttcccgcgaatatctcactggcggttacacttctactgattttgtgaccgccgg 25881017  T
Q  145 acacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctct 228  Q
    ||||||||||||| |||||||  || | ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||    
T  25881018 acacacgtgtgcc-ttacaacaactatgcattcacccacctctataaataggaggctcctcacaacttccaaggtagaatctct 25881100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 15327795 - 15327934
Alignment:
Q  86 ccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacct 185  Q
    |||||||||||||||||||| ||||| ||||| |||||   |||||||||||  | | | || ||||||||| ||||||| ||||| |||||||||||||    
T  15327795 ccacgttcccgcgaatatcttaccggcggttacacttcttacgatttcgtaaccgccggtcatacgtgtgcc-ttacaacagctctgcattcacccacct 15327893  T
Q  186 ctataaatagaaggctcctcgcaacctccaaggtagaatct 226  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  15327894 ctataaatataaggctcctcgcagcctccaaggtagaatct 15327934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 248
Target Start/End: Original strand, 24837634 - 24837803
Alignment:
Q  79 ctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattca 178  Q
    ||||||||||||| | | ||||||| |||| || ||||| ||||||| | |||||||||  | | |||||| |||||||||||||||| |||| ||||||    
T  24837634 ctctttcccacgtcctcacgaatatatcacgggaggttacacttcccccaatttcgtaaccgccggacacatgtgtgccattacaacgactctacattca 24837733  T
Q  179 cccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcacttctaaaccctcatt 248  Q
    |||||||||| | ||||  |||||| |||| ||||||| |  |||||| |||||||| | | ||||||||    
T  24837734 cccacctctacagataggtggctccccgcagcctccaacgaggaatctatttcacttatcagccctcatt 24837803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 248
Target Start/End: Complemental strand, 5356711 - 5356507
Alignment:
Q  45 agcaactgagattagttcaaacgaactgtaaagcctcttt-cccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggca 143  Q
    ||||| |||||  ||||||||||||||| || | |||||| |||| | |||||||||| |||| |||  ||||| ||| ||| |||||||||||  |       
T  5356711 agcaattgagaccagttcaaacgaactgcaacgtctctttacccatgatcccgcgaatctctccccgacggttacactacccacgatttcgtaaccgttg 5356612  T
Q  144 gacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcacttctaaaccc 243  Q
    | ||||||||||||||||||||  |||| ||| |||||||||||||| | ||  |  |||||| |  | || ||||||||||||||||||||||||||||    
T  5356611 ggcacacgtgtgccattacaacaactctccatccacccacctctatataaaggggaatcctcgtagtccccgaggtagaatctctttcacttctaaaccc 5356512  T
Q  244 tcatt 248  Q
     ||||    
T  5356511 ccatt 5356507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 10886734 - 10886891
Alignment:
Q  33 gggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctcttt-cccacgttcccgcgaatatctcaccggtggttatacttccctcgatt 131  Q
    ||||||||||  |||||  ||||  |||||||||||||||||||  |||||| ||||||||| ||||||| |||| |||   |||| ||||||| |||||    
T  10886734 gggggtgcacagagcaatagagaacagttcaaacgaactgtaaaatctctttccccacgttctcgcgaatctctccccgactgttacacttcccacgatt 10886833  T
Q  132 tcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctata 190  Q
    ||||||| | | | ||||| |||||| || |||||||||| ||  ||||||||||||||    
T  10886834 tcgtaatcgtcgggcacacatgtgcc-tttcaacggctctgcaaacacccacctctata 10886891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 22452908 - 22452956
Alignment:
Q  142 cagacacacgtgtgccattacaacggctcttcattcacccacctctata 190  Q
    ||||||||||||||||||||||| |||||| ||  ||||||||||||||    
T  22452908 cagacacacgtgtgccattacaatggctctgcagccacccacctctata 22452956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 12094324 - 12094231
Alignment:
Q  19 cccttctccgcgagg-ggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccgg 111  Q
    ||||||||||||||| ||||||| |  || ||| ||||| ||||||| |||||||||  | |||||||||| |||| | |||||||||| ||||    
T  12094324 cccttctccgcgagggggggtgctcagagaaacagagatcagttcaatcgaactgtactgtctctttcccatgttctcacgaatatctccccgg 12094231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 242
Target Start/End: Original strand, 11998106 - 11998289
Alignment:
Q  57 tagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgc 156  Q
    ||||||||||||||||||| | |||| ||| ||||||||  |||| |||||||| |||||| ||||||| | |||| |||  || |||||||| ||||||    
T  11998106 tagttcaaacgaactgtaacgtctctctcc-acgttcccaggaatctctcaccgatggttacacttccccctattttgtagctgtcagacacatgtgtgc 11998204  T
Q  157 cattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatctctttcacttctaaacc 242  Q
    ||||||||||||||| |||||||||||||||||| | ||  | |||||| |||  ||||||||||||||||| |||||||| ||||    
T  11998205 cattacaacggctctgcattcacccacctctatataaaggggactcctcacaa-ttccaaggtagaatctctctcacttcttaacc 11998289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 243
Target Start/End: Original strand, 5632668 - 5632821
Alignment:
Q  88 acgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctct 187  Q
    ||||||| ||||||||||||| || ||||| |||||   |||||||||||  | ||| |||| ||||||| ||||||||||||| ||||||||| |||||    
T  5632668 acgttcctgcgaatatctcactggcggttacacttcttacgatttcgtaaccgtcagtcacatgtgtgcc-ttacaacggctctgcattcacccgcctct 5632766  T
Q  188 ataaatagaaggctcctcgcaacctccaaggtagaatctctttcacttctaaaccc 243  Q
    |||||||| ||   ||||||| ||||||||||||||||| ||||||| ||||||||    
T  5632767 ataaataggagaa-cctcgcagcctccaaggtagaatctttttcactcctaaaccc 5632821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 82 - 208
Target Start/End: Complemental strand, 1860959 - 1860833
Alignment:
Q  82 tttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcaccc 181  Q
    ||||||||||||||  |||||| ||||||| ||||  || ||    ||||| |||| || | |||| ||||||||||||||||||||||| |||| ||||    
T  1860959 tttcccacgttcccatgaatatttcaccggcggttgcacctcttatgatttggtaactgccggacaaacgtgtgccattacaacggctctgcatttaccc 1860860  T
Q  182 acctctataaatagaaggctcctcgca 208  Q
    |||||||| ||||| ||||||||||||    
T  1860859 acctctattaataggaggctcctcgca 1860833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 169
Target Start/End: Original strand, 28794036 - 28794143
Alignment:
Q  59 gttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgcca 158  Q
    |||||||||||||| || | ||||| | ||||||||||  ||| |||| | || ||||| ||||||| |||||||||||  | |||||||||||||||||    
T  28794036 gttcaaacgaactgcaacgtctctt-cacacgttcccg--aatctctctctggcggttacacttcccacgatttcgtaaccgtcagacacacgtgtgcca 28794132  T
Q  159 ttacaacggct 169  Q
    |||||||||||    
T  28794133 ttacaacggct 28794143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 19028367 - 19028408
Alignment:
Q  82 tttcccacgttcccgcgaatatctcaccggtggttatacttc 123  Q
    |||||||||||||||||||||||||||| | ||||| |||||    
T  19028367 tttcccacgttcccgcgaatatctcaccagcggttacacttc 19028408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 20726269 - 20726228
Alignment:
Q  82 tttcccacgttcccgcgaatatctcaccggtggttatacttc 123  Q
    |||||||||||||||||||||||||||| | ||||| |||||    
T  20726269 tttcccacgttcccgcgaatatctcaccagcggttacacttc 20726228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 87486 - 87420
Alignment:
Q  160 tacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatct 226  Q
    |||||||||||| ||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  87486 tacaacggctctgcattcacccacctctataaataagaggctcctcgcaacctctaaggtagaatct 87420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1401 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1401
Description:

Target: scaffold1401; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 1061 - 831
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctcttt-cccacgttcccgcgaatatctcaccggtggtta 117  Q
    |||||||||||||||||| ||| || ||||  |||||   |||||||| ||| ||||   |||||| ||||||||||||||||||||||||||   ||||    
T  1061 cccttctccgcgaggggg-tgctcggagcatttgagacctgttcaaacaaacagtaacatctctttacccacgttcccgcgaatatctcaccgtcagtta 963  T
Q  118 tacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaag 217  Q
     ||| | |  | ||||||||  | | | |||| ||||||| |||||| |||||| |||||||| |||||||||||||| |||||||| | |  |||||||    
T  962 cactcctcctggtttcgtaaccgccggtcacatgtgtgcc-ttacaatggctctgcattcacctacctctataaataggaggctccttgtaggctccaag 864  T
Q  218 gtagaatctctttcacttctaaaccctcattct 250  Q
    |||||||||||  ||||   |||||||||||||    
T  863 gtagaatctctcacactctcaaaccctcattct 831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 195
Target Start/End: Original strand, 36785 - 36921
Alignment:
Q  58 agttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgcc 157  Q
    ||||||||||||||| || | ||||| | || |||||||| ||| ||||   || ||||| ||||||| | |||||||||  | | ||||||||||||||    
T  36785 agttcaaacgaactgcaacgtctctt-cgcaagttcccgcaaatctctctttggaggttacacttcccacaatttcgtaaccgtcggacacacgtgtgcc 36883  T
Q  158 attacaacggctcttcattcacccacctctataaatag 195  Q
    |||||||||||||| ||  |||||||||||||| ||||    
T  36884 attacaacggctctacagccacccacctctatatatag 36921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 49193 - 49368
Alignment:
Q  19 cccttctccgcga-ggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctctttcccacgttcccgcgaatatctcaccggtggtta 117  Q
    |||||| |||||| |||||||||||| |||||  ||||| |||||||| ||| || || | ||||| | ||| |||||| |||| |||| | |  |||||    
T  49193 cccttccccgcgaaggggggtgcacggagcaagcgagatcagttcaaaggaattgcaacgtctctt-cgcactttcccgtgaatctctctctgc-ggtta 49290  T
Q  118 tacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatag 195  Q
     ||||||| |||||||||||      ||||||| |||||||||||||||||||| ||| |||||||||||||| ||||    
T  49291 cacttcccacgatttcgtaaccattggacacacatgtgccattacaacggctctgcatccacccacctctatatatag 49368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 4325 - 4177
Alignment:
Q  79 ctctttcccacgttcccgcgaatatctcaccggtggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattca 178  Q
    |||||||||| ||||| |||||| ||||| ||| ||||| | ||| | | |||||||||  | | || ||||||||||| | ||||||||||| ||| ||    
T  4325 ctctttcccatgttcctgcgaatctctcatcggcggttacatttctcacaatttcgtaaccgccggatacacgtgtgccgt-acaacggctctgcataca 4227  T
Q  179 cccacctctataaatagaaggctcctcgcaacctccaaggtagaatctct 228  Q
    |||||||||||| | | | | |||||||||| | |||  |||||||||||    
T  4226 cccacctctatataaacaggactcctcgcaatccccacagtagaatctct 4177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 68906 - 68857
Alignment:
Q  19 cccttctccgcgaggggggtgcacgaagcaactgagattagttcaaacga 68  Q
    |||||||| |||||||||||||||| |||||| |||| ||||||||||||    
T  68906 cccttctctgcgaggggggtgcacggagcaaccgagactagttcaaacga 68857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 26682 - 26596
Alignment:
Q  26 ccgcgaggggggtgcacgaagcaactgagattagttcaaacgaactgtaaagcctct-ttcccacgttcccgcgaatatctcaccgg 111  Q
    ||||||||| ||||||||||||||||||||  |||||||| ||  ||||| | |||| ||||||| ||||||| ||| |||| ||||    
T  26682 ccgcgagggaggtgcacgaagcaactgagaccagttcaaaggagttgtaatgtctctcttcccacattcccgcaaatctctccccgg 26596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 1748 - 1666
Alignment:
Q  113 ggttatacttccctcgatttcgtaattggcagacacacgtgtgccattacaacggctcttcattcacccacctctataaatag 195  Q
    ||||| ||||||| |||||||||||  | ||||  || || |||||||||||||||||| ||  || ||||||||||||||||    
T  1748 ggttacacttcccacgatttcgtaaccgccagagccaagtatgccattacaacggctctgcagccatccacctctataaatag 1666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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