View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6481_low_8 (Length: 244)
Name: NF6481_low_8
Description: NF6481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6481_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 48749450 - 48749233
Alignment:
| Q |
16 |
cagtttcatggttttcgcgttgttcatccgagtgattcgcatctagattcataacagaagatgattttggaaaaacaggtgtagctaaaaacgttgggtt |
115 |
Q |
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| T |
48749450 |
cagtttcatggttttcgcgttgttcatccgagtgattcgcatctagattcataacagaagatgattttggaaaaacaggtgtagctaaaaacgttgggtt |
48749351 |
T |
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| Q |
116 |
ctgatcaccagccataatgacaagaactttctcttcataaactttcacagattctttgtttgaattttcaccttctttttcattctccatgtttctgttg |
215 |
Q |
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| T |
48749350 |
ctgatcaccagccataatgacaagaactttctcttcataaactttcacagattctttgtttgaattttcaccttctttttcattctccatgtttctgttg |
48749251 |
T |
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| Q |
216 |
ttgctgttattttcttcg |
233 |
Q |
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| T |
48749250 |
ttgctgttattttcttcg |
48749233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 3425695 - 3425762
Alignment:
| Q |
90 |
acaggtgtagctaaaaacgttgggttctgatcaccagccataatgacaagaactttctcttcataaac |
157 |
Q |
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| T |
3425695 |
acaggggtagccaagaatgttgggttctcattaccagccataatgacaaggatattctcttcataaac |
3425762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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