View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6482_low_1 (Length: 513)
Name: NF6482_low_1
Description: NF6482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6482_low_1 |
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| [»] scaffold0252 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 14 - 497
Target Start/End: Original strand, 7774788 - 7775278
Alignment:
| Q |
14 |
tcaatgcaacttgagagtaagccagaaactttttgttgcgaaatgaaaatgaaatcttcaccaaggccaccaccaaaaatgaatttggctaatgagttgg |
113 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7774788 |
tcaatgcaacttgagagcaagccagaaactttttgttgtgaaatgaaaatgaaatcttcaccaaggtcaccaccaaaaatgaatttggctaatgagttgg |
7774887 |
T |
|
| Q |
114 |
ttgcagtagcaggacatgtattgtttgtgcaaccaggtttgaatgggccattacaaccaatacatgcaacatctgaacatctttctgagccacatgcaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774888 |
ttgcagtagcaggacatgtattgtttgtgcaaccaggtttgaatgggccattacaaccaatacatgcaacatctgaacatctttctgagccacatgcaat |
7774987 |
T |
|
| Q |
214 |
tggaatgtaggatgatgaattgtaatgagtgtcacaatcataccatagattttctccagcaagatcaatggctagattgaaatttgttctaggagttcct |
313 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774988 |
tggaatgtaggatgatgaattataatgagtgttacaatcataccaaaggttttctccagcaagatcaatggctagattgaaatttgttctaggagttcct |
7775087 |
T |
|
| Q |
314 |
atgccaactgatgtgtagaatagattggttgatgggtcnnnnnnnataggaagaatgaaggagtgtggttgagatgctgataagcaagaaagtgagaaaa |
413 |
Q |
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| T |
7775088 |
atgccaactgatgtgtagaatagattggttgatgggtctttttttataggaagaatgaaggagtgtggttgagatgctgataagcaagaaagtgagaaaa |
7775187 |
T |
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| Q |
414 |
gagatagtgaaaggaggaagaaatggatgataactgaagaagaaaccattgtgaatgaa-------gatattgtatttttggtgtgcatag |
497 |
Q |
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| T |
7775188 |
gagatagtgaaaggaggaagaaatggatgataactgaagaagaaaccattgtgaatgaagatatgggatattgtatttttggtgtgcatag |
7775278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 10 - 351
Target Start/End: Original strand, 7767457 - 7767798
Alignment:
| Q |
10 |
aatatcaatgcaacttgagagtaagccagaaactttttgttgcgaaatgaaaatgaaatcttcaccaaggccaccaccaaaaatgaatttggctaatgag |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7767457 |
aatatcaatgcaacttgagagtaagccagaaactttttgttgagaaatgaaaatgaaatcttcaccaaggccaccaccaaaaatgaatttagctaatgag |
7767556 |
T |
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| Q |
110 |
ttggttgcagtagcaggacatgtattgtttgtgcaaccaggtttgaatgggccattacaaccaatacatgcaacatctgaacatctttctgagccacatg |
209 |
Q |
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| T |
7767557 |
ttggttgcagaagcagcacatgtgttgtttgtgcaacctggcttgaatgggccattgcagccaacacatgcagtatctgtacatcttgttgagccacatt |
7767656 |
T |
|
| Q |
210 |
caattggaatgtaggatgatgaattgtaatgagtgtcacaatcataccatagattttctccagcaagatcaatggctagattgaaatttgttctaggagt |
309 |
Q |
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||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7767657 |
gaataggagtgtatgatgatgaattataatgagtgtcacaatcataccatagattttctccagcaagatcaatggctagattgaaatttgttctaggagt |
7767756 |
T |
|
| Q |
310 |
tcctatgccaactgatgtgtagaatagattggttgatgggtc |
351 |
Q |
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| T |
7767757 |
tcctatgccaactgatgtgtagaatagattggttgatgggtc |
7767798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 62 - 351
Target Start/End: Complemental strand, 11252 - 10974
Alignment:
| Q |
62 |
atgaaatcttcaccaaggccaccaccaaaaatgaatttggctaatgagttggttgcagtagcaggacatgtattgtttgtgcaaccaggtttgaatgggc |
161 |
Q |
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|||| ||||||||| ||||||||| |||||||||||||| ||||||||| ||| | |||||||||||||||||||||||||||| |||||||| |||| |
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| T |
11252 |
atgatatcttcaccgaggccaccattgaaaatgaatttggcaaatgagttgattgtattagcaggacatgtattgtttgtgcaacctggtttgaaggggc |
11153 |
T |
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| Q |
162 |
cattacaaccaatacatgcaacatctgaacatctttctgagccacatgcaattggaatgtaggatgatgaattgtaatgagtgtcacaatcataccatag |
261 |
Q |
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|||| |||||||| |||| || ||||| |||| ||| |||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| || |
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| T |
11152 |
cattgcaaccaatgcatgtaatatctggacatttttttgagccacattcaattggaaaataggatgatgaattgtagtgagtgtcacaatcataccaaag |
11053 |
T |
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| Q |
262 |
attttctccagcaagatcaatggctagattgaaatttgttctaggagttcctatgccaactgatgtgtagaatagattggttgatgggtc |
351 |
Q |
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| T |
11052 |
attttcacctgcaagatcaat-----------aattttttcgaggtgttcctatgccaactgatgtgtagaaaagattggttgatgggtc |
10974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 475
Target Start/End: Complemental strand, 10930 - 10835
Alignment:
| Q |
380 |
ggttgagatgctgataagcaagaaagtga-gaaaagagatagtgaaaggaggaagaaatggatgataactgaagaagaaaccattgtgaatgaagat |
475 |
Q |
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|||||||||| |||| ||||||||||||| |||||| |||| | |||| ||||||||||||| | || |||||||| ||||||||||||||||| |
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| T |
10930 |
ggttgagatgttgatgagcaagaaagtgaagaaaag-gatactagtaggaagaagaaatggatggtgacaaaagaagaagccattgtgaatgaagat |
10835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 21268465 - 21268565
Alignment:
| Q |
16 |
aatgcaacttgagagtaagccagaaactttttgttgcgaaatgaaaatgaaatcttcaccaaggccaccaccaaaaatgaatttggctaatgagttggtt |
115 |
Q |
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|||||||| ||||| |||||| ||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||| || ||||||||||| |
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| T |
21268465 |
aatgcaacaagagagcaagccataaactttttgttgtgaaatgaaaatcaaatcttcatcaaggttaccaccaaaaatgaatttgactgatgagttggtt |
21268564 |
T |
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| Q |
116 |
g |
116 |
Q |
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| T |
21268565 |
g |
21268565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 54302687 - 54302596
Alignment:
| Q |
32 |
aagccagaaactttttgttgcgaaatgaaaatgaaatcttcaccaaggccaccaccaaaaatgaatttggctaatgagttggttgcagtagca |
124 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||| ||||| | ||||||||| |||||||| |||||||| |||||||||||| |
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| T |
54302687 |
aagccagaaactttttgttgtgaaatgaaaattaaatcttcatcaaggttaacaccaaaaaggaatttgg-gaatgagttagttgcagtagca |
54302596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 12075618 - 12075559
Alignment:
| Q |
416 |
gatagtgaaaggaggaagaaatggatgataactgaagaagaaaccattgtgaatgaagat |
475 |
Q |
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| T |
12075618 |
gatagtgataggaggaagaaatggatgatgacataagaagaaggcattatgaatgaagat |
12075559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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