View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6482_low_3 (Length: 206)

Name: NF6482_low_3
Description: NF6482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6482_low_3
NF6482_low_3
[»] chr7 (3 HSPs)
chr7 (13-194)||(335595-335776)
chr7 (13-194)||(3522706-3522887)
chr7 (13-194)||(10269208-10269389)
[»] chr2 (4 HSPs)
chr2 (13-194)||(2272619-2272800)
chr2 (13-194)||(3534933-3535114)
chr2 (13-194)||(12532994-12533175)
chr2 (13-194)||(7356517-7356697)
[»] chr8 (6 HSPs)
chr8 (13-194)||(9313562-9313743)
chr8 (13-194)||(23717240-23717421)
chr8 (13-194)||(32742219-32742400)
chr8 (13-194)||(35216450-35216631)
chr8 (13-194)||(38223206-38223387)
chr8 (13-194)||(42988986-42989167)
[»] chr6 (2 HSPs)
chr6 (13-194)||(14219007-14219188)
chr6 (13-194)||(30704105-30704286)
[»] chr5 (5 HSPs)
chr5 (13-194)||(43488107-43488288)
chr5 (13-194)||(2026714-2026895)
chr5 (13-194)||(23415700-23415881)
chr5 (13-194)||(37038760-37038941)
chr5 (13-194)||(3615323-3615504)
[»] chr4 (9 HSPs)
chr4 (13-194)||(14677174-14677355)
chr4 (13-194)||(45106933-45107114)
chr4 (13-183)||(21395741-21395911)
chr4 (13-194)||(1085593-1085774)
chr4 (13-194)||(17195378-17195559)
chr4 (13-194)||(10485488-10485669)
chr4 (13-184)||(49550105-49550276)
chr4 (13-72)||(5926592-5926651)
chr4 (13-72)||(27182471-27182530)
[»] chr3 (5 HSPs)
chr3 (13-194)||(44553301-44553482)
chr3 (13-194)||(38518163-38518344)
chr3 (13-194)||(34945608-34945789)
chr3 (13-85)||(27644508-27644580)
chr3 (13-74)||(20394921-20394982)
[»] chr1 (2 HSPs)
chr1 (13-194)||(16641825-16642006)
chr1 (13-194)||(41773947-41774128)
[»] scaffold0129 (1 HSPs)
scaffold0129 (13-184)||(39080-39251)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 335595 - 335776
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  335595 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 335694  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  335695 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtatgttgatgt 335776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 3522706 - 3522887
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3522706 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 3522805  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  3522806 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 3522887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 10269389 - 10269208
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10269389 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 10269290  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  10269289 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 10269208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 2272619 - 2272800
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2272619 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 2272718  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  2272719 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtatgttgatgt 2272800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 3534933 - 3535114
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3534933 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 3535032  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||| || ||||||    
T  3535033 ctacaggatggcttgggaaattcaagcaccgacatggcataaagttatttcgtcgttttggcgagagtgggtctgttgatgt 3535114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 12532994 - 12533175
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12532994 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 12533093  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||| || ||||||    
T  12533094 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcattttggcgagagtgggtctgttgatgt 12533175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 7356697 - 7356517
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7356697 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 7356598  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  7356597 ctacaggatggcttggg-aattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtttgttgatgt 7356517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 9313743 - 9313562
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9313743 catcaagaacgtgtgaatatcataggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 9313644  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  9313643 ctacaggatggcttgggaaattcaagcactgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 9313562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 23717421 - 23717240
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23717421 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 23717322  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  23717321 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 23717240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 32742400 - 32742219
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32742400 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 32742301  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  32742300 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 32742219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 35216450 - 35216631
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35216450 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 35216549  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  35216550 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 35216631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 38223206 - 38223387
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  38223206 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaacgaaactcttgtaccctcatgatgattcagattttaacttct 38223305  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  38223306 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 38223387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 42988986 - 42989167
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  42988986 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaacttctgtaccctcatgatgattcagattttaacttct 42989085  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| || || ||||||    
T  42989086 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgagtctgttgatgt 42989167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 14219007 - 14219188
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14219007 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 14219106  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  14219107 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 14219188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 30704286 - 30704105
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30704286 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 30704187  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| || ||||||    
T  30704186 ctacatgatggcttgggaaattcaagcaccgacatggcataaagtcatttcatcgttttggcgagagtgggtctgttgatgt 30704105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 43488107 - 43488288
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43488107 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 43488206  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  43488207 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 43488288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 2026714 - 2026895
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2026714 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 2026813  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| || ||||||    
T  2026814 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttgtcgagagtgggtctgttgatgt 2026895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 23415700 - 23415881
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23415700 catcaagaacgtgtgaatttcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 23415799  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  23415800 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 23415881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 37038941 - 37038760
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37038941 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 37038842  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| || ||||||    
T  37038841 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttgacgagagtgggtctgttgatgt 37038760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 3615323 - 3615504
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  3615323 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttataccctcatgatgattcagattttaacttct 3615422  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| || ||||||    
T  3615423 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttgacgagagtgggtctgttgatgt 3615504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 14677174 - 14677355
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14677174 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 14677273  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  14677274 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 14677355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 45106933 - 45107114
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45106933 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 45107032  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  45107033 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 45107114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 21395741 - 21395911
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21395741 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 21395840  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtggg 183  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  21395841 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtggg 21395911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 1085774 - 1085593
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1085774 catcaagaacgtgtgaatatcacaggagaattaattttgtagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 1085675  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  1085674 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 1085593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 17195559 - 17195378
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17195559 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 17195460  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
     |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  17195459 gtacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 17195378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 10485488 - 10485669
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10485488 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 10485587  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||| || ||||||    
T  10485588 ctacaggatgacttgggaaattcaagcaccgacatggcataaagtcatttcgtcattttggcgagagtgggtctgttgatgt 10485669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 49550276 - 49550105
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49550276 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 49550177  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggt 184  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||| || |||||||||||||||||    
T  49550176 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcatccttttggcgagagtgggt 49550105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 5926592 - 5926651
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatg 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5926592 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatg 5926651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 27182530 - 27182471
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatg 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27182530 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatg 27182471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 44553482 - 44553301
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44553482 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 44553383  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  44553382 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 44553301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 38518344 - 38518163
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38518344 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 38518245  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||| || ||||||    
T  38518244 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcattttggcgagagtgggtctgttgatgt 38518163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 34945608 - 34945789
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  34945608 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgcaccctcatgatgattcagattttaacttct 34945707  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||| || ||||||    
T  34945708 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcattttggcgagagtgggtctgttgatgt 34945789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 27644580 - 27644508
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtacc 85  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27644580 catcaagaacgtgtgaatattacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtacc 27644508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 20394921 - 20394982
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaa 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20394921 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaa 20394982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 16642006 - 16641825
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16642006 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 16641907  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  16641906 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 16641825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 41773947 - 41774128
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41773947 catcaagaacgtgtgaatatcacaggagaattaattttgtagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 41774046  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggtatgatgatgt 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  41774047 ctacaggatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggtctgttgatgt 41774128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 39251 - 39080
Alignment:
Q  13 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccatcatgatgattcagattttaacttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39251 catcaagaacgtgtgaatatcacaggagaattaattttgcagaaggcaagagatacaatgaaactcttgtaccctcatgatgattcagattttaacttct 39152  T
Q  113 ctacaggatggcttgggaaattcaagcactgacatggcataaaatcatttcgtcgttttggcgagagtgggt 184  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  39151 ctacatgatggcttgggaaattcaagcaccgacatggcataaagtcatttcgtcgttttggcgagagtgggt 39080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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