View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6483_high_7 (Length: 333)
Name: NF6483_high_7
Description: NF6483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6483_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 41152692 - 41152984
Alignment:
| Q |
1 |
atttgcagattttgagggacattggagttcgaactatgaggttgatgacgaacaatccagcaaaatttgttggtcttaaaggatatggtttagctgtgac |
100 |
Q |
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| T |
41152692 |
atttgcagattttgagggacattggagttcgaactatgaggttgatgacaaacaatccagcaaaatttgttggtcttaaaggatatggtttagctgtgac |
41152791 |
T |
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| Q |
101 |
aggtcgtgttcctgtgctaacaccaatcactgatgcaaacaagcgttacctagaaacaaaaaggactaagatgggtcatatttatgggtctgatatataa |
200 |
Q |
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| T |
41152792 |
aggtcgtgttcctgtgctaacaccaatcactgatgcaaacaagcgttacctagaaacaaaaaggactaagatgggacatatttatgggtctgatatataa |
41152891 |
T |
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| Q |
201 |
ggatctcaatgattcaattgtaaataaccaagattcatcgaagaacacatagcttacacataatacgacagaatgaaaagtttgtatactgtt |
293 |
Q |
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| T |
41152892 |
ggatctcaatgattcaattgtaaataaccaagattcatcgaagaacacatagcctacacataatacgacagaatgaaaagtttgtatactgtt |
41152984 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 37266938 - 37266850
Alignment:
| Q |
3 |
ttgcagattttgagggacattggagttcgaactatgaggttgatgacgaacaatccagcaaaatttgttggtcttaaaggatatggttt |
91 |
Q |
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|||||||| ||||||||| | || ||||| |||||| | ||||||| |||||||||||||||| |||||| || ||||| |||||||| |
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| T |
37266938 |
ttgcagatattgagggacttgggtgttcgttctatgaagctgatgacaaacaatccagcaaaatatgttgggctcaaaggttatggttt |
37266850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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