View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6483_high_8 (Length: 313)

Name: NF6483_high_8
Description: NF6483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6483_high_8
NF6483_high_8
[»] chr5 (12 HSPs)
chr5 (11-297)||(10452542-10452847)
chr5 (11-159)||(17441063-17441212)
chr5 (11-159)||(31874018-31874167)
chr5 (42-159)||(10453061-10453178)
chr5 (42-152)||(31873695-31873807)
chr5 (43-158)||(17440732-17440849)
chr5 (104-166)||(10331947-10332009)
chr5 (109-159)||(37887670-37887720)
chr5 (109-158)||(41083355-41083404)
chr5 (102-158)||(16900996-16901052)
chr5 (102-158)||(22471955-22472011)
chr5 (102-154)||(38163674-38163726)
[»] chr8 (14 HSPs)
chr8 (11-157)||(34602014-34602160)
chr8 (11-158)||(27453125-27453273)
chr8 (42-159)||(34602374-34602492)
chr8 (12-159)||(3444453-3444602)
chr8 (77-159)||(27453508-27453591)
chr8 (102-158)||(44807333-44807389)
chr8 (104-158)||(8038321-8038375)
chr8 (102-159)||(15589633-15589690)
chr8 (106-155)||(17075016-17075065)
chr8 (106-155)||(17573205-17573254)
chr8 (102-155)||(29435082-29435135)
chr8 (102-159)||(31947852-31947909)
chr8 (107-159)||(29197297-29197348)
chr8 (104-160)||(32498375-32498431)
[»] chr7 (7 HSPs)
chr7 (14-158)||(5490503-5490648)
chr7 (42-159)||(5490865-5490981)
chr7 (102-158)||(33159483-33159539)
chr7 (105-167)||(41445963-41446025)
chr7 (109-157)||(8409337-8409385)
chr7 (102-158)||(29163099-29163155)
chr7 (110-158)||(29163315-29163363)
[»] chr1 (12 HSPs)
chr1 (11-158)||(31426070-31426217)
chr1 (42-158)||(31425740-31425856)
chr1 (42-159)||(24491516-24491634)
chr1 (42-157)||(28637459-28637570)
chr1 (42-157)||(28637107-28637220)
chr1 (14-158)||(24491155-24491300)
chr1 (109-161)||(26811449-26811501)
chr1 (102-157)||(15911961-15912016)
chr1 (109-158)||(1712369-1712418)
chr1 (74-158)||(24196481-24196566)
chr1 (109-165)||(6912446-6912502)
chr1 (119-159)||(16356730-16356770)
[»] chr3 (12 HSPs)
chr3 (11-159)||(43040350-43040500)
chr3 (11-114)||(4810966-4811069)
chr3 (42-158)||(44457385-44457501)
chr3 (11-158)||(44457026-44457172)
chr3 (41-153)||(43040025-43040138)
chr3 (42-155)||(4811283-4811390)
chr3 (102-159)||(54476041-54476098)
chr3 (104-168)||(51187948-51188011)
chr3 (109-155)||(43001596-43001642)
chr3 (102-159)||(54716474-54716531)
chr3 (104-156)||(37457388-37457440)
chr3 (102-158)||(45125374-45125430)
[»] chr2 (15 HSPs)
chr2 (11-158)||(29824927-29825073)
chr2 (11-154)||(25668172-25668312)
chr2 (42-157)||(25668656-25668766)
chr2 (102-158)||(39374388-39374444)
chr2 (104-159)||(28365510-28365565)
chr2 (102-158)||(37343941-37343997)
chr2 (102-165)||(11188298-11188361)
chr2 (74-149)||(38716413-38716488)
chr2 (105-159)||(8740152-8740206)
chr2 (109-159)||(21024726-21024776)
chr2 (102-159)||(10741336-10741393)
chr2 (102-158)||(2755208-2755264)
chr2 (102-158)||(32661403-32661459)
chr2 (102-158)||(36286122-36286178)
chr2 (104-164)||(41454505-41454565)
[»] chr6 (19 HSPs)
chr6 (12-159)||(13828692-13828838)
chr6 (42-157)||(31329838-31329951)
chr6 (43-156)||(14194449-14194559)
chr6 (43-167)||(13829053-13829177)
chr6 (31-155)||(31330137-31330259)
chr6 (106-167)||(24897081-24897142)
chr6 (104-165)||(16415581-16415642)
chr6 (104-155)||(929466-929517)
chr6 (92-159)||(5414831-5414898)
chr6 (93-159)||(23124925-23124992)
chr6 (102-157)||(24119492-24119547)
chr6 (109-159)||(12730601-12730651)
chr6 (104-157)||(9952175-9952227)
chr6 (108-157)||(24418486-24418535)
chr6 (102-155)||(28070534-28070587)
chr6 (102-158)||(4037037-4037093)
chr6 (110-158)||(11307342-11307390)
chr6 (102-158)||(14168976-14169032)
chr6 (81-124)||(34192338-34192382)
[»] chr4 (12 HSPs)
chr4 (12-159)||(6979304-6979450)
chr4 (43-157)||(6979624-6979739)
chr4 (40-159)||(47205359-47205474)
chr4 (42-154)||(9643924-9644035)
chr4 (102-158)||(19938585-19938641)
chr4 (40-158)||(47205927-47206042)
chr4 (104-159)||(49869679-49869734)
chr4 (112-158)||(24296768-24296814)
chr4 (110-155)||(16006459-16006504)
chr4 (102-159)||(44121046-44121103)
chr4 (102-146)||(27018228-27018272)
chr4 (102-158)||(51542943-51542999)
[»] scaffold0050 (1 HSPs)
scaffold0050 (92-162)||(81000-81070)
[»] scaffold2010 (1 HSPs)
scaffold2010 (102-158)||(492-548)
[»] scaffold0032 (1 HSPs)
scaffold0032 (82-156)||(40065-40139)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 10452847 - 10452542
Alignment:
Q  11 cagagactgagaaattgccataatctccatcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtca 110  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||||||| ||||||||| ||    
T  10452847 cagagactgagaaattgtcataatctccatcaaaatcagctaatcaaaagagggtcaaaagttagggggtcaaaatatccattttttttaaagggggcca 10452748  T
Q  111 aaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcctagtatttaattagattagacccaa-------------------cactatatt 191  Q
    |||||| |||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |                   |||||||||    
T  10452747 aaatcgtaacttttcaaaacataaggggtgaaaagtgcatttaagcctagtatttaattagattagaccccattgatatttgcaaagacttcactatatt 10452648  T
Q  192 atg-ttaaaattatcggcaatgcatatgaaactaagtgaataaaatcataaaggtatctggcaatgactaatagatctggtaaatgaacaaaccagatta 290  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  10452647 atgtttaaaattatcggcaatgcatatgaaactaagtgaataaaatcataaaggtatctggcaatgactaatagatctggtaaatgaacaaacta-atta 10452549  T
Q  291 acatttt 297  Q
    |||||||    
T  10452548 acatttt 10452542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 17441063 - 17441212
Alignment:
Q  11 cagagactgagaaattgccataatctccatcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttata-aagggggtc 109  Q
    |||| ||||| |||||| ||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| | || ||||||| |    
T  17441063 cagacactgaaaaattgacataatctctatcaaaatcagctaatcaaaagagggacaaaagttaaggggtcaaaatatccattttctttataagggggcc 17441162  T
Q  110 aaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    |||||||||||||||  ||| | ||| | |||||||||||||||||||||    
T  17441163 aaaatcgcaactttttgaaacacaggggatgaaaagtgcatttaagccta 17441212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 31874018 - 31874167
Alignment:
Q  11 cagagactgagaaattgccataatctccatcaaaatcagctaatcaaaagagggccaaaagtga-aggggtcaaaatatcaattttttataaagggggtc 109  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| |  |||||||||| ||| |||||||   ||||||       
T  31874018 cagagactgagaaattggcataatctctatcaaaatcagctaatcaatagagggccaaaagttaggggggtcaaaacatccatttttttctaaggggaca 31874117  T
Q  110 aaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    |||||||||||||||  ||| ||||| | |||||| ||||||||||||||    
T  31874118 aaaatcgcaactttttgaaacataggggatgaaaaatgcatttaagccta 31874167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 10453061 - 10453178
Alignment:
Q  42 aaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtga 141  Q
    ||||||||||||||||||||||| ||||||| | ||| |||||||||| ||||||| ||||||||| |||||||| ||||||| |||| |||   | |||    
T  10453061 aaaatcagctaatcaaaagagggtcaaaagttaggggatcaaaatatccattttttttaaagggggccaaaatcgtaactttttaaaacataaaggatga 10453160  T
Q  142 aaagtgcatttaagccta 159  Q
    ||| ||||||||||||||    
T  10453161 aaaatgcatttaagccta 10453178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 31873807 - 31873695
Alignment:
Q  42 aaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaa----ttttttataaagggggtcaaaatcgcaacttttcaaaatataggag 137  Q
    ||||||||||||||||||||||||||||||| | ||| |||||||||| |    |||||| ||||  ||||||||||| ||||||||  |||||||| |     
T  31873807 aaaatcagctaatcaaaagagggccaaaagttaggggatcaaaatatctattttttttttctaaa--gggtcaaaatcacaactttttgaaatatagaaa 31873710  T
Q  138 gtgaaaagtgcattt 152  Q
    |||||||||||||||    
T  31873709 gtgaaaagtgcattt 31873695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 17440849 - 17440732
Alignment:
Q  43 aaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttata-aagggggtcaaaatcgcaac-ttttcaaaatataggaggtg 140  Q
    |||||||||||||||||||||| ||||||| | | ||| |||||||  ||||||| || |||| || |||||||||||| ||||  ||| ||||| ||||    
T  17440849 aaatcagctaatcaaaagagggtcaaaagttatgaggttaaaatattcattttttttataaggtggccaaaatcgcaacttttttgaaacatagggggtg 17440750  T
Q  141 aaaagtgcatttaagcct 158  Q
    |||| |||||||||||||    
T  17440749 aaaaatgcatttaagcct 17440732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 10332009 - 10331947
Alignment:
Q  104 ggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcctagtattta 166  Q
    |||| |||||||||||||||| |||| ||||| ||| ||||||||| ||||||||| ||||||    
T  10332009 ggggccaaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaagcctaatattta 10331947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 37887720 - 37887670
Alignment:
Q  109 caaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    |||||||||||||||| |||| ||||| ||| ||||||||| |||||||||    
T  37887720 caaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaagccta 37887670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 41083355 - 41083404
Alignment:
Q  109 caaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    ||||||||||| |||| |||||||||||||  ||||||||| ||||||||    
T  41083355 caaaatcgcaattttttaaaatataggaggccaaaagtgcaattaagcct 41083404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 16901052 - 16900996
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    ||||||||||||||||||| |||  ||| |||||||| |||||||||| || |||||    
T  16901052 agggggtcaaaatcgcaacattttgaaacataggaggcgaaaagtgcagtttagcct 16900996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 22471955 - 22472011
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    ||||||||||||||||||||| |   || ||||||||| ||||||||| ||||||||    
T  22471955 agggggtcaaaatcgcaacttcttgtaacataggaggtcaaaagtgcaattaagcct 22472011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 38163674 - 38163726
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaa 154  Q
    |||||| |||||||||||||| | |||||||||||||  ||||||||| ||||    
T  38163674 agggggccaaaatcgcaacttcttaaaatataggaggccaaaagtgcaattaa 38163726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 34602160 - 34602014
Alignment:
Q  11 cagagactgagaaattgccataatctccatcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtca 110  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| ||||||| ||||||||| ||    
T  34602160 cagagactcagaaattgtcataatctccatcaaaatcagctaatcaaaatagggccaaaagttagggggtcaaaatatccattttttttaaagggggcca 34602061  T
Q  111 aaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcc 157  Q
    ||||||||||||||  ||| ||||| |||||||||||||||||||||    
T  34602060 aaatcgcaactttttgaaacatagggggtgaaaagtgcatttaagcc 34602014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 27453273 - 27453125
Alignment:
Q  11 cagagactgagaaattgccataatctccatcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttata-aagggggtc 109  Q
    |||||||||| |||||| |||| |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||  |||||| || ||||||| |    
T  27453273 cagagactgaaaaattggcatagtctctatcaaaatcagctaatcaaaagagggccaaaagttagggggtcaaaatatcctttttttttataagggggcc 27453174  T
Q  110 aaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    ||| |||||||||||  ||| ||||| |||||||| |||||||||||||    
T  27453173 aaattcgcaactttttgaaacatagggggtgaaaaatgcatttaagcct 27453125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 34602374 - 34602492
Alignment:
Q  42 aaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaata-tcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtg 140  Q
    ||||||||||||||||||||||||||||||| | |||||||||||| ||| |||||| ||||||||| |||||| |||||||||  ||| ||||||||||    
T  34602374 aaaatcagctaatcaaaagagggccaaaagttagggggtcaaaatattcatttttttttaaagggggccaaaattgcaactttttgaaacataggaggtg 34602473  T
Q  141 aaaagtgcatttaagccta 159  Q
    |||| ||||||||||||||    
T  34602474 aaaattgcatttaagccta 34602492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 3444453 - 3444602
Alignment:
Q  12 agagactgagaaattgccataatctccatcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaa--ttttttataaagggggtc 109  Q
    ||||||||| |||||  ||||||||| | | |||||||||||||||||||||| ||||| | | ||||||| ||||||||  |||||||||| ||| | |    
T  3444453 agagactgaaaaattagcataatctctaactaaatcagctaatcaaaagagggtcaaaaattagggggtcagaatatcaattttttttataaggggagcc 3444552  T
Q  110 aaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    |||||  |||||||| |||| ||||| ||| |||||||||||| ||||||    
T  3444553 aaaattacaactttttaaaacatagggggtaaaaagtgcatttgagccta 3444602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 27453508 - 27453591
Alignment:
Q  77 gggtcaaaatatcaattttttata-aagggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    ||||||||||||| ||||||| || ||||||| ||||||| ||||||||  ||| ||||| |||||||||||||||||||||||    
T  27453508 gggtcaaaatatccattttttttataagggggccaaaatcacaactttttgaaacatagggggtgaaaagtgcatttaagccta 27453591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 44807333 - 44807389
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||||| |||||||||||||||| |||| ||||| ||| ||||||||| ||||||||    
T  44807333 agggggccaaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaagcct 44807389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 8038321 - 8038375
Alignment:
Q  104 ggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    ||||||||||||||||||||| |||| ||| ||||| ||||||||| | ||||||    
T  8038321 ggggtcaaaatcgcaacttttgaaaagatatgaggtcaaaagtgcaatcaagcct 8038375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 15589690 - 15589633
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    |||| |||||||||||||||||| |||| ||||| ||| ||||||||| |||| ||||    
T  15589690 agggagtcaaaatcgcaacttttaaaaagatagggggtaaaaagtgcaattaacccta 15589633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 17075016 - 17075065
Alignment:
Q  106 ggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaag 155  Q
    ||||||||||||||||||| |||| ||||| ||| ||||||||| |||||    
T  17075016 ggtcaaaatcgcaacttttaaaaagatagggggtcaaaagtgcaattaag 17075065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 17573254 - 17573205
Alignment:
Q  106 ggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaag 155  Q
    ||||||||||||||||||| |||| ||||| ||| ||||||||| |||||    
T  17573254 ggtcaaaatcgcaacttttaaaaagatagggggtcaaaagtgcaattaag 17573205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 29435135 - 29435082
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaag 155  Q
    ||||||| ||||||||||| ||| |||| ||| |||||||||| ||||||||||    
T  29435135 agggggttaaaatcgcaacattttaaaacataagaggtgaaaaatgcatttaag 29435082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 31947909 - 31947852
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    |||||| |||||||||||||||| |||| ||||| ||  ||||||||| |||||||||    
T  31947909 agggggccaaaatcgcaacttttgaaaagatagggggccaaaagtgcaattaagccta 31947852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 29197348 - 29197297
Alignment:
Q  107 gtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    |||||||||||||||||| |||| ||||| ||| ||||||||| |||||||||    
T  29197348 gtcaaaatcgcaacttttgaaaagatagg-ggtcaaaagtgcaattaagccta 29197297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 32498431 - 32498375
Alignment:
Q  104 ggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcctag 160  Q
    |||| |||||||||||||||| |||| ||||| ||  ||||||||| ||||||||||    
T  32498431 ggggccaaaatcgcaacttttgaaaagatagggggccaaaagtgcaattaagcctag 32498375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 5490648 - 5490503
Alignment:
Q  14 agactgagaaattgccataatctccatcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatat-caattttttataaagggggtcaaa 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||||| ||||||||| ||||    
T  5490648 agactgagaaattgtcataatctccatcaaaatcagctaatcaaaatagggccaaaagttaaggggtcaaaatatccatttttttttaaagggggccaaa 5490549  T
Q  113 atcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    ||||||||||||  ||| ||| | |||||||||||| |||||||||    
T  5490548 atcgcaactttttgaaacataaggggtgaaaagtgcttttaagcct 5490503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 5490865 - 5490981
Alignment:
Q  42 aaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtga 141  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||| |||||| |||||||||  ||| ||||| |||||    
T  5490865 aaaatcagctaatcaaaagagggccaaaagttagggggtcaaaatatccatttttt-taaagggggccaaaattgcaactttttgaaacatagggggtga 5490963  T
Q  142 aaagtgcatttaagccta 159  Q
    ||||||||||||||||||    
T  5490964 aaagtgcatttaagccta 5490981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 33159539 - 33159483
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||||| |||||||||||||||| |||| ||||| ||| ||||||||| ||||||||    
T  33159539 agggggccaaaatcgcaacttttaaaaagatagggggttaaaagtgcaattaagcct 33159483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 41446025 - 41445963
Alignment:
Q  105 gggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcctagtatttaa 167  Q
    |||||||||||||||||||| |||| |||||  |  ||||||||| ||||||||| |||||||    
T  41446025 gggtcaaaatcgcaacttttgaaaagatagggagccaaaagtgcaattaagcctattatttaa 41445963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 8409337 - 8409385
Alignment:
Q  109 caaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcc 157  Q
    |||||||||||||||| |||| ||||||||  ||||||||| |||||||    
T  8409337 caaaatcgcaacttttaaaaagataggaggccaaaagtgcaattaagcc 8409385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 29163155 - 29163099
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||||| |||||||||||||||| |||| ||||| ||  ||||||||| ||||||||    
T  29163155 agggggccaaaatcgcaacttttgaaaagatagggggcaaaaagtgcaattaagcct 29163099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 29163315 - 29163363
Alignment:
Q  110 aaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    ||||||||||||||| |||| |||| |||| ||||||||| ||||||||    
T  29163315 aaaatcgcaacttttgaaaagatagaaggtcaaaagtgcaattaagcct 29163363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 31426070 - 31426217
Alignment:
Q  11 cagagactgagaaattgccataatctccatcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtca 110  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||| | ||| ||| |||||| |||||||  ||||||||  |    
T  31426070 cagagactgagaaattgtcataatctcgttcaaaatcagctaatcaaaagagggccaaaagttaggggatcataatatccatttttttaaaagggggcta 31426169  T
Q  111 aaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||||||    
T  31426170 aaatcgcaactttttaaaacataagaggtgaaaagtgcatttaagcct 31426217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 31425856 - 31425740
Alignment:
Q  42 aaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtga 141  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||| ||  |||||||||||||||| |||| |||||||||||    
T  31425856 aaaatcagctaatcaaaagagggccaaaagttagggggtcaaaatatccattttttttaaagtggaccaaaatcgcaactttttaaaacataggaggtga 31425757  T
Q  142 aaagtgcatttaagcct 158  Q
    |||||||||||| ||||    
T  31425756 aaagtgcatttatgcct 31425740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 24491516 - 24491634
Alignment:
Q  42 aaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttata-aagggggtcaaaatcgcaacttttcaaaatataggaggtg 140  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| || ||| ||| ||||||| |||||||| |||| ||||| ||||    
T  24491516 aaaatcagctaatcaaaagagggccaaaagttagggggtcaaaatatccattttttttataagagggccaaaatcacaactttttaaaacataggtggtg 24491615  T
Q  141 aaaagtgcatttaagccta 159  Q
    |||||||||||||||||||    
T  24491616 aaaagtgcatttaagccta 24491634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 28637459 - 28637570
Alignment:
Q  42 aaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtga 141  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||| ||||||| |||||||| |||||||||||||||||  ||| ||||  |||||    
T  28637459 aaaatcagctaatcaaaagagggccaaaagt-taggggtcaaaatatccatttttt-taaaggggatcaaaatcgcaactttttgaaacatag--ggtga 28637554  T
Q  142 aaagtgcatttaagcc 157  Q
    ||||||||||||||||    
T  28637555 aaagtgcatttaagcc 28637570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 28637220 - 28637107
Alignment:
Q  42 aaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtga 141  Q
    |||||||| ||||||||||| |||||||||| | |||||||||||||| ||||||| ||||||| | |||||||||||||||| |||| ||| | |||||    
T  28637220 aaaatcagttaatcaaaagatggccaaaagtta-ggggtcaaaatatccatttttt-taaagggagccaaaatcgcaactttttaaaacataaggggtga 28637123  T
Q  142 aaagtgcatttaagcc 157  Q
    ||||||||||||||||    
T  28637122 aaagtgcatttaagcc 28637107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 24491300 - 24491155
Alignment:
Q  14 agactgagaaattgccataatctccatcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttat-aaagggggtcaaa 112  Q
    ||||||||||||||  |||||||| |||||||| |||||| |||||||  | ||||||| | |||||||||||||| ||||||| |  ||||||||||||    
T  24491300 agactgagaaattggtataatctctatcaaaattagctaaacaaaagaaagtcaaaagttagggggtcaaaatatccattttttttgtaagggggtcaaa 24491201  T
Q  113 atcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    ||||||||||||  ||| ||| | | | ||||||||||||||||||    
T  24491200 atcgcaactttttgaaacataagggataaaaagtgcatttaagcct 24491155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 26811501 - 26811449
Alignment:
Q  109 caaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcctagt 161  Q
    |||||||||||||||| |||| ||||| ||| ||||||||| |||||||||||    
T  26811501 caaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaagcctagt 26811449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 15911961 - 15912016
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcc 157  Q
    |||||| |||||||||||||||| |||| ||||| ||| ||||||||| |||||||    
T  15911961 agggggccaaaatcgcaacttttgaaaaaatagggggtcaaaagtgcaattaagcc 15912016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 1712418 - 1712369
Alignment:
Q  109 caaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||||||||||||||| |||| ||||| ||| ||||||||| ||||||||    
T  1712418 caaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaagcct 1712369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 24196481 - 24196566
Alignment:
Q  74 aaggggtcaaaatatcaattttttataa-agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||||| ||||||  | ||||||| ||| |||||| |||||||||||| ||| |||| |||||||| |||||||||| || |||||    
T  24196481 aaggggccaaaattgccattttttttaatagggggccaaaatcgcaacattttaaaacataggaggcgaaaagtgcagtttagcct 24196566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 6912446 - 6912502
Alignment:
Q  109 caaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcctagtattt 165  Q
    ||||||||||||||||||||| ||||| ||  ||||||||| |||| |||| |||||    
T  6912446 caaaatcgcaacttttcaaaagatagggggccaaaagtgcaattaaacctattattt 6912502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 16356730 - 16356770
Alignment:
Q  119 acttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    |||||| ||||||||||| ||||| ||||||||||||||||    
T  16356730 acttttgaaaatataggaagtgaatagtgcatttaagccta 16356770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 43040350 - 43040500
Alignment:
Q  11 cagagactgagaaattgccataatctccatcaaaa-tcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttata-aagggggt 108  Q
    |||| |||||||||||| ||||||||| ||||||| |||||||||||||||||| |||||||| | |||||| ||||||| ||||||| || ||||||||    
T  43040350 cagatactgagaaattggcataatctctatcaaaaatcagctaatcaaaagaggcccaaaagttagggggtcgaaatatccattttttttataagggggt 43040449  T
Q  109 caaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    ||||||||||||||||  ||| |||||| ||||||||||||||||||||||    
T  43040450 caaaatcgcaactttttgaaacataggaagtgaaaagtgcatttaagccta 43040500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 4811069 - 4810966
Alignment:
Q  11 cagagactgagaaattgccataatctccatcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtca 110  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| ||||||| | ||||||| ||    
T  4811069 cagagactgagaaattgtcataatctccatcaaaatcagctaatcaaaagagggccaaaagttaggggatcaaaatatccatttttttttaagggggcca 4810970  T
Q  111 aaat 114  Q
    ||||    
T  4810969 aaat 4810966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 44457385 - 44457501
Alignment:
Q  42 aaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttata-aagggggtcaaaatcgcaacttttcaaaatataggaggtg 140  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||  ||||||| || ||||||| ||||||||||||||||  ||| ||||||||||    
T  44457385 aaaatcagctaatcaaaagagggccaaaagtta-ggggtcaaaatattcattttttttagaagggggccaaaatcgcaactttttgaaacataggaggtg 44457483  T
Q  141 aaaagtgcatttaagcct 158  Q
    |||| |||||||||||||    
T  44457484 aaaaatgcatttaagcct 44457501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 44457172 - 44457026
Alignment:
Q  11 cagagactgagaaattgccataatctccatcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatc---aattttttataaaggggg 107  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||  |||||||||||||||   ||  |||||| |||||||    
T  44457172 cagagactgagaaattggcataatctctatcaaaatcagcaaatcaaaagagggccgaaagt-taggggtcaaaatatccaaaaaattttat-aaggggg 44457075  T
Q  108 tcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
     ||||||| ||||||||  ||| ||  | ||||||||||||||||||||||    
T  44457074 ccaaaatcacaactttttgaaacat--ggggtgaaaagtgcatttaagcct 44457026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 43040138 - 43040025
Alignment:
Q  41 caaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttata-aagggggtcaaaatcgcaacttttcaaaatataggaggt 139  Q
    ||||||||||| ||||||||| |||||||||| | |||||||||||||| ||||||| || ||||||| ||||||| ||||||||  ||| | ||| |||    
T  43040138 caaaatcagctcatcaaaagacggccaaaagttagggggtcaaaatatccattttttttataagggggccaaaatcacaactttttgaaacacagggggt 43040039  T
Q  140 gaaaagtgcattta 153  Q
    ||||||||||||||    
T  43040038 gaaaagtgcattta 43040025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 155
Target Start/End: Original strand, 4811283 - 4811390
Alignment:
Q  42 aaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtga 141  Q
    |||||||||||||||||| |||||||||||| | |||||||||||||| |||||      | | ||||||||||||||||||| |||| |||||  ||||    
T  4811283 aaaatcagctaatcaaaaaagggccaaaagttagggggtcaaaatatccatttt------atgaggtcaaaatcgcaactttttaaaacatagggagtga 4811376  T
Q  142 aaagtgcatttaag 155  Q
    ||||||||||||||    
T  4811377 aaagtgcatttaag 4811390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 54476098 - 54476041
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    ||||||||||||||||||||| | |||||||||| ||  ||||||||| |||||||||    
T  54476098 agggggtcaaaatcgcaacttcttaaaatatagggggccaaaagtgcaattaagccta 54476041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 51187948 - 51188011
Alignment:
Q  104 ggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcctagtatttaat 168  Q
    |||| |||||||||||||||| |||| ||| ||||| ||||||||| ||||||||| ||||||||    
T  51187948 gggggcaaaatcgcaacttttaaaaagata-gaggtcaaaagtgcaattaagcctattatttaat 51188011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 43001642 - 43001596
Alignment:
Q  109 caaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaag 155  Q
    |||||| ||||||||| |||||||||||||| ||||||||| |||||    
T  43001642 caaaattgcaacttttgaaaatataggaggtcaaaagtgcaattaag 43001596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 54716531 - 54716474
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    |||||||||||||| |||||||| |||| ||||| ||  ||||||||| |||||||||    
T  54716531 agggggtcaaaatcacaacttttgaaaagatagggggccaaaagtgcaattaagccta 54716474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 37457388 - 37457440
Alignment:
Q  104 ggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagc 156  Q
    |||||||||||| |||||||| |||| |||||  |||| ||||||||||||||    
T  37457388 ggggtcaaaatcacaactttttaaaacatagggtgtgataagtgcatttaagc 37457440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 45125374 - 45125430
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    ||||||||||||||||||||||| | |||||||| ||  ||||||||| | ||||||    
T  45125374 agggggtcaaaatcgcaacttttgagaatatagggggccaaaagtgcaatcaagcct 45125430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 29824927 - 29825073
Alignment:
Q  11 cagagactgagaaattgccataatctccatcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttata-aagggggtc 109  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||||||||| | ||||||||  ||||||||||||||| ||||||| || |||||||||    
T  29824927 cagagactgaaaaattggcataatctctatcaaaatcagctaatcaaaagatgaccaaaagt-taggggtcaaaatatccattttttttataagggggtc 29825025  T
Q  110 aaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||||||||||||||  ||| ||||| ||| ||||||||||||||||||    
T  29825026 aaaatcgcaactttttgaaacatagg-ggtaaaaagtgcatttaagcct 29825073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 25668312 - 25668172
Alignment:
Q  11 cagagactgagaaattgccataatctccatcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtca 110  Q
    ||||||||||||||||| ||| ||||||||||||||| |||||||||||| |||| ||| || |||||||||||||||| ||||||| |||  |||||||    
T  25668312 cagagactgagaaattgtcatgatctccatcaaaatctgctaatcaaaagggggcaaaaggttaaggggtcaaaatatccatttttt-taa--ggggtca 25668216  T
Q  111 aaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaa 154  Q
    | ||  |||||||| |||| ||||  ||||||||||||||||||    
T  25668215 agattacaactttttaaaacatagagggtgaaaagtgcatttaa 25668172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 25668656 - 25668766
Alignment:
Q  42 aaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtga 141  Q
    |||||||||||||||||| ||||| |||||| | |||||||| |||||  ||||||| |    |||||||||||| ||||||| |||||||| | |||||    
T  25668656 aaaatcagctaatcaaaatagggctaaaagttagggggtcaacatatcctttttttaaa----gggtcaaaatcgtaactttttaaaatatatg-ggtga 25668750  T
Q  142 aaagtgcatttaagcc 157  Q
    ||| ||||||||||||    
T  25668751 aaaatgcatttaagcc 25668766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 39374388 - 39374444
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    ||||||||||||| ||||||||| |||||||||| ||| ||||||||| ||||||||    
T  39374388 agggggtcaaaattgcaacttttgaaaatatagggggtcaaaagtgcaattaagcct 39374444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 28365565 - 28365510
Alignment:
Q  104 ggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    ||||||||||||||||||||| ||||| || | |||||||||||||||| ||||||    
T  28365565 ggggtcaaaatcgcaactttttaaaatttaaggggtgaaaagtgcattttagccta 28365510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 37343941 - 37343997
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||| |||||||||||||||||| |||| ||||||||  ||||||||| ||||||||    
T  37343941 agggagtcaaaatcgcaacttttgaaaagataggaggccaaaagtgcaattaagcct 37343997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 11188361 - 11188298
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcctagtattt 165  Q
    |||||| |||||||||||||||| |||| ||||| ||| ||||||||| ||||| ||| |||||    
T  11188361 agggggccaaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaaggctattattt 11188298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 38716413 - 38716488
Alignment:
Q  74 aaggggtcaaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgca 149  Q
    |||||| ||||||  | ||||||| || ||||||||||||| ||||| |||  ||| |||||||||||||||||||    
T  38716413 aaggggccaaaattgctattttttttatagggggtcaaaattgcaacattttgaaacataggaggtgaaaagtgca 38716488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 8740206 - 8740152
Alignment:
Q  105 gggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    |||||||||||||||||| | |||||||||| ||| |||| |||| |||||||||    
T  8740206 gggtcaaaatcgcaacttcttaaaatatagggggttaaaactgcaattaagccta 8740152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 21024726 - 21024776
Alignment:
Q  109 caaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    |||||||||||||||| |||| ||||| ||| ||||||||| |||||||||    
T  21024726 caaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaagccta 21024776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 10741336 - 10741393
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    |||||||||||| |||||||||| |||| ||||| ||  ||||||||| |||||||||    
T  10741336 agggggtcaaaaccgcaacttttgaaaagatagggggccaaaagtgcaattaagccta 10741393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 2755208 - 2755264
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||||| |||||||||||||||| |||| ||||| ||  ||||||||| ||||||||    
T  2755208 agggggccaaaatcgcaacttttgaaaagatagggggccaaaagtgcaattaagcct 2755264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 32661459 - 32661403
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||||| |||||||||||||||| |||| ||||| ||  ||||||||| ||||||||    
T  32661459 agggggacaaaatcgcaacttttgaaaagatagggggccaaaagtgcaattaagcct 32661403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 36286178 - 36286122
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||||| |||||||||||||||| |||||||||  ||  ||||||||| ||||||||    
T  36286178 agggggccaaaatcgcaacttttgaaaatatagagggccaaaagtgcaattaagcct 36286122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 41454565 - 41454505
Alignment:
Q  104 ggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcctagtatt 164  Q
    |||| |||||||||||||||| |||| ||||| ||  ||||||||| ||||||||| ||||    
T  41454565 gggggcaaaatcgcaacttttgaaaagatagggggccaaaagtgcaattaagcctaatatt 41454505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 13828838 - 13828692
Alignment:
Q  12 agagactgagaaattgccataatctccatcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtcaa 111  Q
    ||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| || | || | |||    
T  13828838 agagactgaaaaattggcataatctctatcaaaatcagctaatcaaaagagggccaaaagttagggggtcaaaatatccatttttt-tataaggtgccaa 13828740  T
Q  112 aatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    | ||| |||||||  ||  ||||| |||||||||||||||||||||||    
T  13828739 attcgtaactttttgaatcatagggggtgaaaagtgcatttaagccta 13828692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 31329951 - 31329838
Alignment:
Q  42 aaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtga 141  Q
    |||||||||||||||||||||||||||||||   |||||||||||||| ||||||| ||||| ||| |||||||||||||||| |||| ||| | |||||    
T  31329951 aaaatcagctaatcaaaagagggccaaaagttt-ggggtcaaaatatccatttttt-taaagagggccaaaatcgcaactttttaaaacatatggggtga 31329854  T
Q  142 aaagtgcatttaagcc 157  Q
    ||||||||||||||||    
T  31329853 aaagtgcatttaagcc 31329838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 156
Target Start/End: Complemental strand, 14194559 - 14194449
Alignment:
Q  43 aaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtgaa 142  Q
    |||||| ||||||||||||||||||||||| | |||||||||||||| ||||||  | |||||||||||||||||||| ||| |||| ||||| ||||||    
T  14194559 aaatcaactaatcaaaagagggccaaaagttagggggtcaaaatatccattttt--ttaagggggtcaaaatcgcaacattttaaaacatagg-ggtgaa 14194463  T
Q  143 aagtgcatttaagc 156  Q
    ||||||||||||||    
T  14194462 aagtgcatttaagc 14194449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 13829053 - 13829177
Alignment:
Q  43 aaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtgaa 142  Q
    |||| ||||||||||||||||  ||||||| | |||||||||||||| |||||||   ||||||||||||||| ||||||||  ||| ||||||| ||||    
T  13829053 aaataagctaatcaaaagaggatcaaaagttagggggtcaaaatatccatttttttataagggggtcaaaatcacaactttttgaaacataggagatgaa 13829152  T
Q  143 aagtgcatttaagcctagtatttaa 167  Q
    |||||||||||| | || |||||||    
T  13829153 aagtgcatttaaacttaatatttaa 13829177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 31330137 - 31330259
Alignment:
Q  31 taatctccatcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaat 130  Q
    ||||||||||||||||||||||||||||||||| |||||| | | || ||||||||||| ||||||| |||| ||||  |||||||||||||||  ||||    
T  31330137 taatctccatcaaaatcagctaatcaaaagaggaccaaaa-ttagggcgtcaaaatatccattttttttaaaaggggctaaaatcgcaactttttgaaat 31330235  T
Q  131 ataggaggtgaaaagtgcatttaag 155  Q
    ||| | ||||||||||| |||||||    
T  31330236 ataag-ggtgaaaagtgtatttaag 31330259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 24897142 - 24897081
Alignment:
Q  106 ggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcctagtatttaa 167  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||| |||| ||||| ||||||    
T  24897142 ggtcaaaatcgcaacttttgaaaagataggaggtcaaaagtgcaattaaccctagaatttaa 24897081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 16415581 - 16415642
Alignment:
Q  104 ggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcctagtattt 165  Q
    ||||||||||||||||||||| ||||| || | ||||||||||||| || |||||| |||||    
T  16415581 ggggtcaaaatcgcaactttttaaaatttaaggggtgaaaagtgcactttagcctaatattt 16415642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 929466 - 929517
Alignment:
Q  104 ggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaag 155  Q
    |||| |||||||||||||||| |||||||||| ||| ||||||||| |||||    
T  929466 gggggcaaaatcgcaacttttaaaaatatagggggtcaaaagtgcaattaag 929517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 5414898 - 5414831
Alignment:
Q  92 ttttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    |||||| ||| ||||||||||||| |||| ||| |||||||| | |||||||| | ||||||||||||    
T  5414898 ttttttttaacgggggtcaaaatcacaaccttttaaaatatatggggtgaaaaatacatttaagccta 5414831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 23124925 - 23124992
Alignment:
Q  93 tttttataa-agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    ||||||||| |||||  |||||||||||| ||| ||||| |||||||||||||||||| || ||||||    
T  23124925 tttttataataggggaccaaaatcgcaacattttaaaatttaggaggtgaaaagtgcaatttagccta 23124992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 24119547 - 24119492
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcc 157  Q
    |||||| |||||||||||||||| |||| ||||||||  ||||||||| |||||||    
T  24119547 agggggccaaaatcgcaacttttgaaaaaataggaggccaaaagtgcaattaagcc 24119492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 12730601 - 12730651
Alignment:
Q  109 caaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    |||||||||||||||| |||| ||||||||  ||||||||| |||||||||    
T  12730601 caaaatcgcaacttttgaaaagataggaggccaaaagtgcaattaagccta 12730651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 9952175 - 9952227
Alignment:
Q  104 ggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcc 157  Q
    ||||||||||||||||||||| |||| ||||| ||| ||||||||| |||||||    
T  9952175 ggggtcaaaatcgcaacttttaaaaagatagg-ggtcaaaagtgcaattaagcc 9952227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 24418535 - 24418486
Alignment:
Q  108 tcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcc 157  Q
    ||||||||||||||||| |||| ||||||||  ||||||||| |||||||    
T  24418535 tcaaaatcgcaacttttgaaaagataggaggccaaaagtgcaattaagcc 24418486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 28070587 - 28070534
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaag 155  Q
    ||||||||||||| ||||| ||| |||||||| |||| ||||| ||||||||||    
T  28070587 agggggtcaaaattgcaacattttaaaatataagaggagaaaattgcatttaag 28070534  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 4037093 - 4037037
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||||| |||||||||||||||| |||| ||||| ||  ||||||||| ||||||||    
T  4037093 agggggccaaaatcgcaacttttgaaaagatagggggccaaaagtgcaattaagcct 4037037  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 11307342 - 11307390
Alignment:
Q  110 aaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    ||||||||||||||| |||| ||||||||  ||||||||| ||||||||    
T  11307342 aaaatcgcaacttttgaaaagataggaggccaaaagtgcaattaagcct 11307390  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 14168976 - 14169032
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||||||||||||||||| |||| |||| ||||| ||  ||||||||| ||||||||    
T  14168976 agggggtcaaaatcgcaaattttgaaaagatagggggccaaaagtgcaattaagcct 14169032  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 34192338 - 34192382
Alignment:
Q  81 caaaatatcaattttttataa-agggggtcaaaatcgcaactttt 124  Q
    ||||||||| ||||||||||| |||||| ||||||||||||||||    
T  34192338 caaaatatccattttttataatagggggccaaaatcgcaactttt 34192382  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 6979450 - 6979304
Alignment:
Q  12 agagactgagaaattgccataatctccatcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtcaa 111  Q
    ||||||||| ||||||  |||||||| ||||||||||||||||| |||||| || |||||| | |||||||||||||| |||||||   ||||||| |||    
T  6979450 agagactgaaaaattggtataatctctatcaaaatcagctaatcgaaagagagcaaaaagttagggggtcaaaatatccatttttttataagggggccaa 6979351  T
Q  112 aatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    ||||||||| |||  ||| |||||| ||||||||||||||||||||||    
T  6979350 aatcgcaaccttttgaaacatagga-gtgaaaagtgcatttaagccta 6979304  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 6979624 - 6979739
Alignment:
Q  43 aaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttata-aagggggtcaaaatcgcaacttttcaaaatataggaggtga 141  Q
    |||||||||||||||||||||  ||| ||| |  ||||||||||||| ||||||| || |||| |||||||||||||||||||  ||| |||||||||||    
T  6979624 aaatcagctaatcaaaagaggatcaagagttagagggtcaaaatatccattttttttataaggcggtcaaaatcgcaactttttgaaacataggaggtga 6979723  T
Q  142 aaagtgcatttaagcc 157  Q
    ||||||||||||||||    
T  6979724 aaagtgcatttaagcc 6979739  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 159
Target Start/End: Complemental strand, 47205474 - 47205359
Alignment:
Q  40 tcaaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggaggt 139  Q
    ||||||| ||||||||||||||||| ||||||| |||||||||||||||| ||||||  | ||||||| ||||||||||| ||||  ||||||||| | |    
T  47205474 tcaaaataagctaatcaaaagagggtcaaaagt-aaggggtcaaaatatccattttt--ttaagggggccaaaatcgcaaatttttgaaatataggggat 47205378  T
Q  140 gaaaagtgcatttaagccta 159  Q
    | ||||||||||||||||||    
T  47205377 g-aaagtgcatttaagccta 47205359  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 9644035 - 9643924
Alignment:
Q  42 aaaatcagctaatcaaaagagggccaaaagtgaaggggtcaaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtga 141  Q
    |||||||  ||||||||||||| |||||| | | || ||||||||||| ||||||| | || |||| | ||||||||||||||  || |||| ||| |||    
T  9644035 aaaatcaattaatcaaaagaggaccaaaaattagggagtcaaaatatccatttttttttaaagggggccaaatcgcaactttttgaagtata-gagatga 9643937  T
Q  142 aaagtgcatttaa 154  Q
    |||||||||||||    
T  9643936 aaagtgcatttaa 9643924  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 19938585 - 19938641
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||||| |||||||||||| ||| |||||||||||||| ||||||||| ||||||||    
T  19938585 agggggccaaaatcgcaacatttaaaaatataggaggtcaaaagtgcaattaagcct 19938641  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 47205927 - 47206042
Alignment:
Q  40 tcaaaatcagctaatcaaaagagggccaaaagtgaaggggtc-aaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggagg 138  Q
    ||||||||||||||||||||||||| |||||||  ||||||| |||| ||| ||||||  | |||||||  ||||||| |||||||  ||||||||  ||    
T  47205927 tcaaaatcagctaatcaaaagaggg-caaaagt-taggggtcaaaaaaatccattttt--ttaagggggcaaaaatcgtaactttttgaaatatagaggg 47206022  T
Q  139 tgaaaagtgcatttaagcct 158  Q
    |||||| |||||||||||||    
T  47206023 tgaaaaatgcatttaagcct 47206042  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 49869679 - 49869734
Alignment:
Q  104 ggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    |||| |||||||||||||||| |||| ||||||||| ||||||||| |||||||||    
T  49869679 ggggccaaaatcgcaacttttgaaaagataggaggtcaaaagtgcaattaagccta 49869734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 24296768 - 24296814
Alignment:
Q  112 aatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    ||||||||||||| |||| ||||||||| ||||||||| ||||||||    
T  24296768 aatcgcaacttttgaaaagataggaggtcaaaagtgcaattaagcct 24296814  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 16006459 - 16006504
Alignment:
Q  110 aaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaag 155  Q
    ||||||||||||||| |||||||||  | |||||||||||||||||    
T  16006459 aaaatcgcaactttttaaaatatagaggatgaaaagtgcatttaag 16006504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 44121046 - 44121103
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagccta 159  Q
    ||||||||||||||||||||||| |||| ||||| ||  ||||||| | |||||||||    
T  44121046 agggggtcaaaatcgcaacttttgaaaagatagggggccaaaagtgtaattaagccta 44121103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 27018272 - 27018228
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagt 146  Q
    ||||||||||||||||||| ||| ||||| ||||||| |||||||    
T  27018272 agggggtcaaaatcgcaacattttaaaatttaggaggcgaaaagt 27018228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 51542999 - 51542943
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||||||||||||||||| |||| |||| ||||  ||| ||||||||| ||||||||    
T  51542999 agggggtcaaaatcgcaattttttaaaacatagatggtcaaaagtgcaattaagcct 51542943  T

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Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 81000 - 81070
Alignment:
Q  92 ttttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcctagta 162  Q
    ||||||| |||||||||||||||||| ||||||  |||  |||| |||||| ||||| |||||||||||||    
T  81000 ttttttaaaaagggggtcaaaatcgctacttttgcaaacttagggggtgaatagtgcgtttaagcctagta 81070  T

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Target: scaffold2010 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold2010
Description:

Target: scaffold2010; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 548 - 492
Alignment:
Q  102 agggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagcct 158  Q
    |||||| |||||||||||||||| |||| ||||| ||| ||||||||| ||||||||    
T  548 agggggccaaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaagcct 492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 40139 - 40065
Alignment:
Q  82 aaaatatcaattttttataaagggggtcaaaatcgcaacttttcaaaatataggaggtgaaaagtgcatttaagc 156  Q
    |||||||| ||||||| |||||| |||||||||| ||| ||||||||| ||   |||  ||||||||||||||||    
T  40139 aaaatatccattttttttaaaggaggtcaaaatcacaatttttcaaaacattaaaggaaaaaagtgcatttaagc 40065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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