View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6483_low_1 (Length: 697)
Name: NF6483_low_1
Description: NF6483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6483_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 186 - 684
Target Start/End: Complemental strand, 2650397 - 2649899
Alignment:
| Q |
186 |
tgttaaggttggagcaaacaagttctcagaaaagaatgcattgggcacaggagctcagagtgatagtaaggactacaaggaagcaccaccagcacctttg |
285 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2650397 |
tgttaaggttggagcaaacaaattctcagaaaagaatgcattgggcacaggagctcagagtgatagtaaggactacaaagaagcaccaccagcacctttg |
2650298 |
T |
|
| Q |
286 |
tttgagccaggagagttgaagtcatggtcattttatagagctgggattgctgaatttgttgcaactttcttgttcctttacatcactgtcttgactgtga |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2650297 |
tttgagccaggagagttgaagtcatggtcattttatagagctgggattgctgaatttgttgcaactttcttgttcctttacatcactgtcttgactgtga |
2650198 |
T |
|
| Q |
386 |
tgggtgtgaataggtcaccctctaaatgtgcctctgttggtattcaaggaattgcttgggcttttggtggtatgatctttgctcttgtctattgcactgc |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2650197 |
tgggtgtgaataggtcaccctctaaatgtgcctctgttggtattcaaggaattgcttgggcttttggtggtatgatctttgctcttgtctattgcactgc |
2650098 |
T |
|
| Q |
486 |
tggaatttcaggtaacttcannnnnnnnnnnnnnnnnnnnnatgaatcatgatacttacactgaatatggcactaatactggccaatgagtaattgaatg |
585 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| |
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| T |
2650097 |
tggaatttcaggtaacttcattttcttttctttacttttttatgagtcatgatacttacaccgaatatgacactaatacttgccaatgagtaattgaatg |
2649998 |
T |
|
| Q |
586 |
taatcacatgtttcaatgtgtcacataaacaccggacaagtctttaatctgaaatgttgattcggtatgtagattcatcataaaatagtatatgatatt |
684 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
2649997 |
taagtacatgtttcaatgtgtcacataaacaccggacaagtctttaatctgaaatgttggttcggtatgtagattcatcataaaatattatatgatatt |
2649899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 2650572 - 2650440
Alignment:
| Q |
13 |
gtaaagttgttaccgttattattagccagcaaagcaaataaacaatgaactttaactttttcaaattcccacacactaataatataaacttcaaccaagg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2650572 |
gtaaagttgttaccgttattattagccagcaaagcaaataaacaatgaactttaactttttcaaattcccacacactaataatataaacttcaaccaagg |
2650473 |
T |
|
| Q |
113 |
acagaactcagaagtgattagtttttgttagct |
145 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
2650472 |
acagaactcagaagtgattagtttttgttagct |
2650440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 269 - 499
Target Start/End: Complemental strand, 35231075 - 35230845
Alignment:
| Q |
269 |
caccaccagcacctttgtttgagccaggagagttgaagtcatggtcattttatagagctgggattgctgaatttgttgcaactttcttgttcctttacat |
368 |
Q |
| |
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|||||||||||||||||||||||||| || | | |||||||| || || ||||||||||| ||||| || ||||| |||||| | || ||||| || |
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| T |
35231075 |
caccaccagcacctttgtttgagccatctgaactcacttcatggtctttctacagagctgggatagctgagttcgttgctactttcctttttctttatat |
35230976 |
T |
|
| Q |
369 |
cactgtcttgactgtgatgggtgtgaataggtcaccctctaaatgtgcctctgttggtattcaaggaattgcttgggcttttggtggtatgatctttgct |
468 |
Q |
| |
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|||||| |||||||| |||||||| ||| | ||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35230975 |
cactgttttgactgttatgggtgttgttagagctgattctaagtgtaagactgtgggtattcaaggaattgcttgggcttttggtggcatgatctttgct |
35230876 |
T |
|
| Q |
469 |
cttgtctattgcactgctggaatttcaggta |
499 |
Q |
| |
|
||||| || || ||||||||||| ||||||| |
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| T |
35230875 |
cttgtttactgtactgctggaatctcaggta |
35230845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 190 - 500
Target Start/End: Original strand, 41036725 - 41037035
Alignment:
| Q |
190 |
aaggttggagcaaacaagttctcagaaaagaatgcattgggcacaggagctcagagtgatagtaaggactacaaggaagcaccaccagcacctttgtttg |
289 |
Q |
| |
|
||||||||||||||||| |||||||| | | | |||| || |||| |||||| ||||| || || |||||||| || |||||||||| || ||||||| |
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| T |
41036725 |
aaggttggagcaaacaaattctcagagaggcagccattagggacagcagctcaaagtgacagcaaagactacaaagagccaccaccagctccattgtttg |
41036824 |
T |
|
| Q |
290 |
agccaggagagttgaagtcatggtcattttatagagctgggattgctgaatttgttgcaactttcttgttcctttacatcactgtcttgactgtgatggg |
389 |
Q |
| |
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|||| || ||| | ||||||||||| ||||| |||||||| |||||||| || || || ||||||||||||||||||||||| | |||||||| ||||| |
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| T |
41036825 |
agcctggtgagctcaagtcatggtctttttacagagctggaattgctgagttcgtagccactttcttgttcctttacatcaccattttgactgtcatggg |
41036924 |
T |
|
| Q |
390 |
tgtgaataggtcaccctctaaatgtgcctctgttggtattcaaggaattgcttgggcttttggtggtatgatctttgctcttgtctattgcactgctgga |
489 |
Q |
| |
|
||| || || ||| |||| |||||| |||||||||| |||||||| ||||||||| ||||||| |||||||||||||| |||||||| |||||||||||| |
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| T |
41036925 |
tgtcaacagatcaacctccaaatgttcctctgttggcattcaaggtattgcttggtcttttgggggtatgatctttgcccttgtctactgcactgctgga |
41037024 |
T |
|
| Q |
490 |
atttcaggtaa |
500 |
Q |
| |
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|| |||||||| |
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| T |
41037025 |
atatcaggtaa |
41037035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 253 - 473
Target Start/End: Complemental strand, 31460992 - 31460772
Alignment:
| Q |
253 |
aaggactacaaggaagcaccaccagcacctttgtttgagccaggagagttgaagtcatggtcattttatagagctgggattgctgaatttgttgcaactt |
352 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||| || | | |||||||| || || ||||||||||| ||||| ||||| || |||| |
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| T |
31460992 |
aaggactacaaggaaccaccaccagcaccattgtttgagccttctgaactcacttcatggtctttctacagagctgggatagctgagtttgtagccactt |
31460893 |
T |
|
| Q |
353 |
tcttgttcctttacatcactgtcttgactgtgatgggtgtgaataggtcaccctctaaatgtgcctctgttggtattcaaggaattgcttgggcttttgg |
452 |
Q |
| |
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| ||||| | ||||||||| |||||||||| |||||||| || ||||| ||||| ||| |||||||||||||||||||||||||| ||||||| |
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| T |
31460892 |
ttctgttcttgtacatcactatcttgactgttatgggtgttaacaggtctgagtctaagtgtaaaactgttggtattcaaggaattgcttggtcttttgg |
31460793 |
T |
|
| Q |
453 |
tggtatgatctttgctcttgt |
473 |
Q |
| |
|
||| ||||||||||||||||| |
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| T |
31460792 |
tggcatgatctttgctcttgt |
31460772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 307 - 500
Target Start/End: Complemental strand, 4483641 - 4483448
Alignment:
| Q |
307 |
tcatggtcattttatagagctgggattgctgaatttgttgcaactttcttgttcctttacatcactgtcttgactgtgatgggtgtgaataggtcaccct |
406 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| ||||| || || || ||||| ||||| || || || || ||||||||||||||||||| || |
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| T |
4483641 |
tcatggtctttctatagggcagggattgctgagtttgtggctacatttttgtttctttatataacggttttaactgtgatgggtgtgaataaatccagta |
4483542 |
T |
|
| Q |
407 |
ctaaatgtgcctctgttggtattcaaggaattgcttgggcttttggtggtatgatctttgctcttgtctattgcactgctggaatttcaggtaa |
500 |
Q |
| |
|
|||||| |||| |||||| |||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||| || |||||||| |
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|
| T |
4483541 |
ataaatgctcctcagttggtgttcagggaattgcttgggcttttggtggaatgatttttgctcttgtttattgtactgctggtatctcaggtaa |
4483448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 436 - 498
Target Start/End: Original strand, 42795960 - 42796023
Alignment:
| Q |
436 |
attgcttgggcttttggt-ggtatgatctttgctcttgtctattgcactgctggaatttcaggt |
498 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||||| || ||||||||||||||||||||| |
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|
| T |
42795960 |
attgcttgggcttttggttggcatgatctttgtccttgtttactgcactgctggaatttcaggt |
42796023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 464
Target Start/End: Complemental strand, 40208099 - 40208068
Alignment:
| Q |
433 |
ggaattgcttgggcttttggtggtatgatctt |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
40208099 |
ggaattgcttgggcttttggtggtatgatctt |
40208068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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