View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6483_low_10 (Length: 206)

Name: NF6483_low_10
Description: NF6483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6483_low_10
NF6483_low_10
[»] chr1 (7 HSPs)
chr1 (17-192)||(24567490-24567665)
chr1 (17-129)||(394910-395022)
chr1 (17-137)||(21010544-21010664)
chr1 (17-148)||(24567703-24567834)
chr1 (60-125)||(42375173-42375238)
chr1 (60-125)||(2790756-2790821)
chr1 (60-125)||(2797186-2797251)
[»] chr3 (6 HSPs)
chr3 (20-140)||(23619209-23619333)
chr3 (31-139)||(4099609-4099717)
chr3 (31-113)||(2185258-2185340)
chr3 (60-125)||(6806765-6806830)
chr3 (151-187)||(5383043-5383079)
chr3 (60-125)||(13719336-13719401)
[»] chr8 (7 HSPs)
chr8 (17-117)||(26491886-26491986)
chr8 (52-139)||(34949369-34949456)
chr8 (60-125)||(86316-86381)
chr8 (60-125)||(91633-91698)
chr8 (60-125)||(19802787-19802852)
chr8 (60-125)||(29010963-29011028)
chr8 (151-187)||(86821-86857)
[»] chr5 (3 HSPs)
chr5 (31-139)||(24092238-24092346)
chr5 (60-125)||(12842780-12842845)
chr5 (60-125)||(37023108-37023173)
[»] chr2 (3 HSPs)
chr2 (31-139)||(36314741-36314849)
chr2 (39-139)||(37758857-37758956)
chr2 (83-129)||(11812202-11812248)
[»] chr7 (4 HSPs)
chr7 (17-139)||(37063023-37063138)
chr7 (60-139)||(13160373-13160452)
chr7 (60-125)||(11716436-11716501)
chr7 (151-187)||(11711654-11711690)
[»] chr4 (2 HSPs)
chr4 (31-139)||(8724551-8724659)
chr4 (59-125)||(37538270-37538336)
[»] scaffold0015 (3 HSPs)
scaffold0015 (60-125)||(24392-24457)
scaffold0015 (60-125)||(29708-29773)
scaffold0015 (151-187)||(29232-29268)
[»] chr6 (4 HSPs)
chr6 (60-125)||(16772647-16772712)
chr6 (60-125)||(32708058-32708123)
chr6 (60-125)||(16777983-16778048)
chr6 (151-187)||(32704198-32704234)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 24567490 - 24567665
Alignment:
Q  17 aattaatacataattggaaacacaatctactaaaaatagatattgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaa 116  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24567490 aattaatacataattggaaacacaatctagtaaaaatagatattgtcaaacatggtggcttgtttggcttaaagtcaatagtagggtggtggaatggaaa 24567589  T
Q  117 aactagcatggtaaggtggtggccatgcaaactaactggtcgtcttcaacctcttgacttccggtggtggtctgtg 192  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24567590 aactagcatggtaagatggtggccatgcaaactaactggtcgtcttcaacctcttgacttccggtggtggtgtgtg 24567665  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 394910 - 395022
Alignment:
Q  17 aattaatacataattggaaacacaatctactaaaaatagatattgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaa 116  Q
    ||||||||||| | ||||||||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||| ||| |||||||| ||    
T  394910 aattaatacatcaatggaaacacaatctagtaaaaatagatattgtcaaacatgatggcttatttggcttaaagtcaatagtagagtgatggaatgggaa 395009  T
Q  117 aactagcatggta 129  Q
    | | |||||||||    
T  395010 agccagcatggta 395022  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 21010544 - 21010664
Alignment:
Q  17 aattaatacataattggaaacacaatctactaaaaatagatattgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaa 116  Q
    |||||| |||| | ||||||||||||||| |||||||||||||||||||||||||||| ||||| | ||||  |||||||||||||||||| ||| | ||    
T  21010544 aattaacacatcaatggaaacacaatctagtaaaaatagatattgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtgaaattggaa 21010643  T
Q  117 aactagcatggtaaggtggtg 137  Q
    | ||||||||||| |||||||    
T  21010644 agctagcatggtagggtggtg 21010664  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 24567834 - 24567703
Alignment:
Q  17 aattaatacataattggaaacacaatctactaaaaatagatattgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaa 116  Q
    ||||||||||| | ||| ||||||||||  ||||||||||||||||||||||||| || |||||||||||||||| | || || ||||||||||||  ||    
T  24567834 aattaatacatcaatgggaacacaatcttgtaaaaatagatattgtcaaacatggcggcttgtttggcttaaagttagtaataaggtggtggaatgagaa 24567735  T
Q  117 aactagcatggtaaggtggtggccatgcaaac 148  Q
    ||||| ||||||| | || |||||||||||||    
T  24567734 aactaacatggtaggttgctggccatgcaaac 24567703  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 42375238 - 42375173
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||| ||||| | ||||  |||||||||||||||||||||| | ||| |||||||    
T  42375238 tgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat 42375173  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 2790756 - 2790821
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||| ||||| | ||||  |||||||||||||||||| ||| | ||| |||||||    
T  2790756 tgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtgaaattggaaagctagcat 2790821  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 2797186 - 2797251
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||| || || | ||||  |||||||||||||||||||||| | ||| |||||||    
T  2797186 tgtcaaacatggtggcttattggccttattgtcaatagtagggtggtggaattggaaagctagcat 2797251  T

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Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 23619333 - 23619209
Alignment:
Q  20 taatacataattggaaacacaatctactaaaaatagatat----tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaa 115  Q
    |||||||| | ||||||||||||||| |||||| | | ||    ||||||||||| ||| ||||||| |||||||||||||||||| ||||||||||| |    
T  23619333 taatacatcaatggaaacacaatctagtaaaaaaaaaaatataatgtcaaacatgatggcttgtttgccttaaagtcaatagtaggatggtggaatggga 23619234  T
Q  116 aaactagcatggtaaggtggtggcc 140  Q
    |||||||||||||| ||||||||||    
T  23619233 aaactagcatggtagggtggtggcc 23619209  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 4099717 - 4099609
Alignment:
Q  31 tggaaacacaatctactaaaaatagatattgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcatggtaa 130  Q
    ||||||||||||||| |||||||||| | ||||||| ||||||| ||||| | ||||  |||||||||||||||||||||| | ||| |||||||||||     
T  4099717 tggaaacacaatctagtaaaaatagaaaatgtcaaaaatggtggcttgttggccttattgtcaatagtagggtggtggaataggaaagctagcatggtag 4099618  T
Q  131 ggtggtggc 139  Q
    |||||||||    
T  4099617 ggtggtggc 4099609  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 2185340 - 2185258
Alignment:
Q  31 tggaaacacaatctactaaaaatagatattgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatgg 113  Q
    |||||| |||||||| ||||||||||||| |||||||||| ||  ||||||| ||||||||||||||||||||||||||||||    
T  2185340 tggaaatacaatctattaaaaatagatatcgtcaaacatgatgacttgtttgccttaaagtcaatagtagggtggtggaatgg 2185258  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 6806765 - 6806830
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||| ||||| | ||||  |||||||||||||||||||||| | ||| |||||||    
T  6806765 tgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat 6806830  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 5383043 - 5383079
Alignment:
Q  151 actggtcgtcttcaacctcttgacttccggtggtggt 187  Q
    |||||||||||||||||||| ||||||||||||||||    
T  5383043 actggtcgtcttcaacctctagacttccggtggtggt 5383079  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 13719336 - 13719401
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||| ||||| | ||||  |||||||||| ||||||||||| | ||| |||||||    
T  13719336 tgtcaaacatggtggcttgttggccttattgtcaatagtaaggtggtggaattggaaagctagcat 13719401  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 26491886 - 26491986
Alignment:
Q  17 aattaatacataattggaaacacaatctactaaaaatagatattgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaa 116  Q
    ||||||||||| | | ||||||||||||| |||||||||| ||||||||||||||||  ||||||| |||||| |||| ||||||||||| ||||| |||    
T  26491886 aattaatacatcaattgaaacacaatctagtaaaaatagacattgtcaaacatggtgacttgtttgccttaaaatcaacagtagggtggtagaatgaaaa 26491985  T
Q  117 a 117  Q
    |    
T  26491986 a 26491986  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 34949456 - 34949369
Alignment:
Q  52 atagatattgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcatggtaaggtggtggc 139  Q
    ||||||||  ||||||||| | |||||||||||||||||||||||||||  | |||||||| |||| ||||||| ||| |||||||||    
T  34949456 atagatatcctcaaacatgatagtttgtttggcttaaagtcaatagtagactcgtggaatgaaaaagctagcatcgtagggtggtggc 34949369  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 86381 - 86316
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||| ||||| | ||||  |||||||||||||||||||||| | ||| |||||||    
T  86381 tgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat 86316  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 91698 - 91633
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||| ||||| | ||||  |||||||||||||||||||||| | ||| |||||||    
T  91698 tgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat 91633  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 19802852 - 19802787
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||| ||||| | ||||  |||||||||||||||||||||| | ||| |||||||    
T  19802852 tgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat 19802787  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 29010963 - 29011028
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||| ||||| | ||||  ||| |||||||||||||||||| | ||| |||||||    
T  29010963 tgtcaaacatggtggcttgttggccttattgtcgatagtagggtggtggaattggaaagctagcat 29011028  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 86857 - 86821
Alignment:
Q  151 actggtcgtcttcaacctcttgacttccggtggtggt 187  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  86857 actggtcgtcttcaacctctagacttccggcggtggt 86821  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 24092238 - 24092346
Alignment:
Q  31 tggaaacacaatctactaaaaatagatattgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcatggtaa 130  Q
    ||||||||||||||| |||||||||| | ||||||||||||||| ||||| | ||||  |||||||||||||||||| | | | ||| |||||||||||     
T  24092238 tggaaacacaatctagtaaaaatagaaaatgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtgaactaggaaagctagcatggtag 24092337  T
Q  131 ggtggtggc 139  Q
    |||||||||    
T  24092338 ggtggtggc 24092346  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 12842845 - 12842780
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||| ||||| | ||||  |||||||||||||||||||||| | ||| |||||||    
T  12842845 tgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat 12842780  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 37023108 - 37023173
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||| ||||||| ||||| | ||||  |||||||||||||||||||||| | ||| |||||||    
T  37023108 tgtcaaatatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat 37023173  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 36314741 - 36314849
Alignment:
Q  31 tggaaacacaatctactaaaaatagatattgtcaaacatggtggtttgtttggcttaaag-tcaatagtagggtggtggaatggaaaaactagcatggta 129  Q
    ||||||||||||||| ||| |||||| | ||||||||||||||||||||| | ||||  | |||||| |||||||||||||| | ||| ||||||||||     
T  36314741 tggaaacacaatctagtaataatagaaaatgtcaaacatggtggtttgttggccttattgttcaatattagggtggtggaataggaaagctagcatggt- 36314839  T
Q  130 aggtggtggc 139  Q
    ||||||||||    
T  36314840 aggtggtggc 36314849  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 37758956 - 37758857
Alignment:
Q  39 caatctactaaaaatagatattgtcaaacatggtggtttgtttggcttaaagtcaatagta-gggtggtggaatggaaaaactagcatggtaaggtggtg 137  Q
    ||||||| |||||||||||||||||  ||||||||| ||||| |  ||||||||||||||| |||||||||||||  ||| |||||||| || | |||||    
T  37758956 caatctagtaaaaatagatattgtc--acatggtggcttgttggcattaaagtcaatagtaggggtggtggaatgagaaagctagcatgataggttggtg 37758859  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 11812202 - 11812248
Alignment:
Q  83 gcttaaagtcaatagtagggtggtggaatggaaaaactagcatggta 129  Q
    |||||||||||||| |||| ||||| |||||| ||||||||||||||    
T  11812202 gcttaaagtcaataataggatggtgcaatggagaaactagcatggta 11812248  T

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Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 37063138 - 37063023
Alignment:
Q  17 aattaatacataattggaaacacaatctactaaaaatagatattgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaa 116  Q
    ||||||||||| | || |||||||||| | |||||||||||||||||||||||||||| ||||| | || ||       ||||||||| |||||||| ||    
T  37063138 aattaatacatcaatgaaaacacaatccagtaaaaatagatattgtcaaacatggtggcttgttggtctcaa-------agtagggtgatggaatgggaa 37063046  T
Q  117 aactagcatggtaaggtggtggc 139  Q
    | ||||||||||| |||||||||    
T  37063045 agctagcatggtagggtggtggc 37063023  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 13160452 - 13160373
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcatggtaaggtggtggc 139  Q
    |||||||||||| || ||||| | ||||   ||||||||||||||||||||| | ||| ||||||||||| |||||||||    
T  13160452 tgtcaaacatggaggcttgttggccttattttcaatagtagggtggtggaattggaaagctagcatggtagggtggtggc 13160373  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 11716501 - 11716436
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||| ||||| | ||||  ||||||| |||||| ||||||| ||||| |||||||    
T  11716501 tgtcaaacatggtggcttgttggccttattgtcaataatagggttgtggaattgaaaagctagcat 11716436  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 11711690 - 11711654
Alignment:
Q  151 actggtcgtcttcaacctcttgacttccggtggtggt 187  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  11711690 actggtcgtcttcaacctctagacttccggcggtggt 11711654  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 8724659 - 8724551
Alignment:
Q  31 tggaaacacaatctactaaaaatagatattgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcatggtaa 130  Q
    ||||||||||||||| ||||| || | |||| ||| ||| |||| ||| ||| | | ||||||||| ||||||||||| ||||| ||||||||||||||     
T  8724659 tggaaacacaatctagtaaaagtatagattgccaaccatagtggcttgattgacatgaagtcaataatagggtggtgggatggagaaactagcatggtat 8724560  T
Q  131 ggtggtggc 139  Q
    |||||||||    
T  8724559 ggtggtggc 8724551  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 37538270 - 37538336
Alignment:
Q  59 ttgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||||  || ||||||||||||||||  |||||||||| |||||| ||||||||||    
T  37538270 ttgtcaaacatggtggcctgattggcttaaagtcaatgttagggtggtgcaatggagaaactagcat 37538336  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 24392 - 24457
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||| ||||| | ||||  |||||||||||||||||||||| | ||| |||||||    
T  24392 tgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat 24457  T

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Target: scaffold0015; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 29708 - 29773
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||| ||||| | ||||  |||||||||||||||||||||| | ||| |||||||    
T  29708 tgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat 29773  T

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Target: scaffold0015; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 29232 - 29268
Alignment:
Q  151 actggtcgtcttcaacctcttgacttccggtggtggt 187  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  29232 actggtcgtcttcaacctctagacttccggcggtggt 29268  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 16772647 - 16772712
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||| ||||| | ||||  |||||||||||||||||||||| | ||| |||||||    
T  16772647 tgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat 16772712  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 32708123 - 32708058
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||||||||||| ||||| | ||||  |||||||||||||||||||||| | ||| |||||||    
T  32708123 tgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat 32708058  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 16777983 - 16778048
Alignment:
Q  60 tgtcaaacatggtggtttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcat 125  Q
    ||||||| ||||||| ||||| | ||||  |||||||||||||||||||||| | ||| |||||||    
T  16777983 tgtcaaatatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat 16778048  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 32704234 - 32704198
Alignment:
Q  151 actggtcgtcttcaacctcttgacttccggtggtggt 187  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  32704234 actggtcgtcttcaacctctagacttccggcggtggt 32704198  T

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