View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6483_low_11 (Length: 202)
Name: NF6483_low_11
Description: NF6483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6483_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 35685234 - 35685048
Alignment:
| Q |
16 |
atattaataccattatgtgcacattagacaaaaatctagatccaaatttcttataccgcgtcatgcaaaacaagccaacttacattaggatgcaatctgc |
115 |
Q |
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| T |
35685234 |
atattaataccattatgtgcacattagacaaaaatctagatccaaatttcttataccgcgtcatgcaaaacaagccaacttacattaggatgcaatctgc |
35685135 |
T |
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| Q |
116 |
acacttctggaatgacttcaacaagcaagtcggctcctttacggtaaaccaatcgactgataacaacaataacaatttcggatctac |
202 |
Q |
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| T |
35685134 |
acacttctggaatgacttcaacaagcaagtcggctcctttacggtaaaccaatcgactgataacaacaataacaatttcggatctac |
35685048 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 40672031 - 40672095
Alignment:
| Q |
127 |
atgacttcaacaagcaagtcggctcctttacggtaaaccaatcgactgataacaacaataacaat |
191 |
Q |
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| T |
40672031 |
atgacttcgacaagcaaatctactcccttccgataaaccaatcggctgataacaacaataacaat |
40672095 |
T |
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