View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6483_low_3 (Length: 408)
Name: NF6483_low_3
Description: NF6483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6483_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 27130797 - 27131068
Alignment:
| Q |
16 |
cactcatcattataaaattatcaatcattatttgatccttattaatagagaggatatcacccactttcctctttaaaataaattattcacttagatgagc |
115 |
Q |
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| T |
27130797 |
cactaatcattataaaattatcaatcattatttgatccttattaatagagaggatatcacccactttcctctttaaaataaattattcacttagatgagc |
27130896 |
T |
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| Q |
116 |
acatctgctaaactaatactattttcctagaaataattggacaaataatgttattgaagaagtcattttcatattaaacgatcagaaacactcatcagat |
215 |
Q |
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| T |
27130897 |
acattttctaaactaatactattttcctagaaataattggacagataatattattgaagaagccattttcatattaaacgatcaggaacactcatcagat |
27130996 |
T |
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| Q |
216 |
gtgataacagtctgcacatgcgtatggttgacaaaataaggggcatgcaaaagatggactttatatcattat |
287 |
Q |
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| T |
27130997 |
gtgataacagcctgcacatgcgtatggttgacaaaataaggggcatgcaaaagatggactttatatcattat |
27131068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 315 - 399
Target Start/End: Original strand, 27131096 - 27131180
Alignment:
| Q |
315 |
gaagaggttttttaattccacttaaagcatttgtctcttcccatttgttatattaaattttccatttttggagtttagagaataa |
399 |
Q |
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| T |
27131096 |
gaagaggttttttaattccacttaaagcatttgtctcttcccatttgttatattaaattttccatttttggagtttagagaataa |
27131180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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