View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6483_low_4 (Length: 384)
Name: NF6483_low_4
Description: NF6483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6483_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 12622244 - 12622608
Alignment:
| Q |
1 |
ttcatggagagataaaattaagatgttaaaagactcgtatggggttcttcaacaaagggtcttgcaaaaattgaactctcacatgtttgatttggaagct |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12622244 |
ttcatggagagataaaattaaaatgttaaaagactcgtatggggttcttcaacaaagggtcttgcaaaaattgaactctcacatgtttgatttggaggct |
12622343 |
T |
|
| Q |
101 |
aagttctctttggagaaagatgagctaaagaacaaatggacttgcaagatgtctgaaatggaaaaacaattgacctctaaactggaggactgtgagtcta |
200 |
Q |
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| T |
12622344 |
aagttctctttggagaaagatgagctaaagaacaaatggacttgcaagatgtctgaaatgaaaaaacaattgacctctaaactggaggactgtgagtcta |
12622443 |
T |
|
| Q |
201 |
gaaacagtgaattagaaaacaaattaaggcaatatgaagctgaaaagatgaaaaatgaagagttgaatgctactcgacaaatggctttgaaagatacaat |
300 |
Q |
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| T |
12622444 |
gaaacagtgaattagaaaacaaattaaggcaatatgaagctgaaaagatgaaaaatgaagagttgaatgctactcaacaaatggctttggaagatacaat |
12622543 |
T |
|
| Q |
301 |
ctgttatttgagggaagaacttggtcagagaaagcatgaggtagaagcttcaaaaaagggattcg |
365 |
Q |
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| T |
12622544 |
ctgttatttgagggaagaacttggtcagagaaagcatgagatagaagcttcaaaaaagggattcg |
12622608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 98 - 347
Target Start/End: Original strand, 12628267 - 12628516
Alignment:
| Q |
98 |
gctaagttctctttggagaaagatgagctaaagaacaaatggacttgcaagatgtctgaaatggaaaaacaattgacctctaaactggaggactgtgagt |
197 |
Q |
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| T |
12628267 |
gctaagtcttctttggaaaaagatgcgctaatcaacaaatggtttcacaggatgtctgaaatgaaaatacaattgatctctaaattggatgattatgagt |
12628366 |
T |
|
| Q |
198 |
ctagaaacagtgaattagaaaacaaattaaggcaatatgaagctgaaaagatgaaaaatgaagagttgaatgctactcgacaaatggctttgaaagatac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| |||| | || |
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| T |
12628367 |
ctagaaacagtgaattagaaaacaaattaaggcaatatgaagctgaaaagatgaaacaagaagagttgaatgctactcaacaaatgattttgcacaatga |
12628466 |
T |
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| Q |
298 |
aatctgttatttgagggaagaacttggtcagagaaagcatgaggtagaag |
347 |
Q |
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|||| ||| ||||||||||| |||||||||||||| ||||| ||||||| |
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| T |
12628467 |
aatcagttcattgagggaagaccttggtcagagaaaacatgatgtagaag |
12628516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 166 - 295
Target Start/End: Original strand, 42843819 - 42843948
Alignment:
| Q |
166 |
acaattgacctctaaactggaggactgtgagtctagaaacagtgaattagaaaacaaattaaggcaatatgaagctgaaaagatgaaaaatgaagagttg |
265 |
Q |
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| T |
42843819 |
acaattgacctctaaattggaggattgtgagtctagaaacaaggaattggaaaacaaattaagacagtatgaagctgaaaaattgaaacaagaagaattg |
42843918 |
T |
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| Q |
266 |
aatgctactcgacaaatggctttgaaagat |
295 |
Q |
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| T |
42843919 |
catgctactcagcaaatgactttgcaagat |
42843948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 63 - 316
Target Start/End: Original strand, 42834868 - 42835115
Alignment:
| Q |
63 |
tgcaaaaattgaactctcacatgtttgatttggaagctaagttctctttggagaaagatgagctaaagaacaaatggacttgcaagat-gtctgaaatgg |
161 |
Q |
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|||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||||| || || || ||||||| | ||| ||||| |
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| T |
42834868 |
tgcaaaaattgaactcggaaatgcttgatttgcaagctaagttctctttggagaaagatgaactgaattt----tgatattgcaagtttgtcaaaaatga |
42834963 |
T |
|
| Q |
162 |
aaaaacaattgacctctaaactggaggactgtgagtctagaaacagtgaattagaaaacaaattaaggcaatatgaagctgaaaagatgaaaaatgaaga |
261 |
Q |
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||| |||||||||||||||||| ||| | |||||||||| ||||| |||||||||||||||||| | |||||||||||||||| ||||| |||| |
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| T |
42834964 |
aaatacaattgacctctaaactagagtattgtgagtctataaacaaggaattagaaaacaaattacgtaaatatgaagctgaaaacttgaaa---caaga |
42835060 |
T |
|
| Q |
262 |
gttgaatgctactcgacaaatggctttgaaagatacaatctgttatttgagggaa |
316 |
Q |
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| T |
42835061 |
gatgcatgctactcaacaaatggttctgcaagatgaaatcagttctttgagggaa |
42835115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 166 - 337
Target Start/End: Complemental strand, 7363785 - 7363613
Alignment:
| Q |
166 |
acaattgacctctaaactggaggactgtgagtctagaaacagtgaattagaaaacaaattaaggcaatatgaagctgaaaagatgaaa-aatgaagagtt |
264 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||||||||| ||||| |||||||||||| | ||||||||||||||||| ||||| | ||||| || |
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| T |
7363785 |
acaattgacctctaaattggaggattgtgagtctagaaacaaggaattggaaaacaaattaggacaatatgaagctgaaaaattgaaatcaagaagaatt |
7363686 |
T |
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| Q |
265 |
gaatgctactcgacaaatggctttgaaagatacaatctgttatttgagggaagaacttggtcagagaaagcat |
337 |
Q |
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| T |
7363685 |
gcatgctactcaacaaatgattttgcaagatgaggttaattctttgagggaagaacttggtcaaagaatgcat |
7363613 |
T |
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