View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6483_low_6 (Length: 347)
Name: NF6483_low_6
Description: NF6483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6483_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 21 - 330
Target Start/End: Original strand, 23141875 - 23142191
Alignment:
| Q |
21 |
aaaaattgagatgaaggaagaatattccaaaaatgatttcacatatatgattaggattttgcatgttaataatctgaaacatataaataataaacatgtg |
120 |
Q |
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| T |
23141875 |
aaaaattgagatgaaggaagaatattccaaaaatgatttcacatatatgattagaattttacatgttaataatctgaaacatataaataataaacatgtg |
23141974 |
T |
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| Q |
121 |
ctttgccaaccatattattgttggtgctgttcttccttgtcctatgggacgaaatttcccaagaatcacatttctaatttaa---aacatgtgctttctg |
217 |
Q |
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| T |
23141975 |
ctttgccaaccatattattgttggtgctgttcttccttgtcctatgggacgaaatttcccaagcatcacatttctaatttaaaacaacatgtgctttctg |
23142074 |
T |
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| Q |
218 |
aaagtgtgtttctcagattacata--ttgtttgaaat--tatacttgaagtagtatgagtagtgagaaaagttctttctgcggcctattcgccaaacatg |
313 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23142075 |
aaagtgtgtttctcagattacatattttgtttgaaattatatacttgaagtaatatgagtagtgggaaaagttctttctgcggcctattcgccaaacatg |
23142174 |
T |
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| Q |
314 |
actttgagccagtatgt |
330 |
Q |
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||||||||||||||||| |
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| T |
23142175 |
actttgagccagtatgt |
23142191 |
T |
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