View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6484_high_3 (Length: 274)

Name: NF6484_high_3
Description: NF6484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6484_high_3
NF6484_high_3
[»] chr8 (1 HSPs)
chr8 (19-262)||(8811647-8811894)
[»] chr7 (3 HSPs)
chr7 (8-98)||(37447922-37448012)
chr7 (35-122)||(25841177-25841265)
chr7 (15-68)||(10646072-10646125)
[»] chr4 (6 HSPs)
chr4 (59-122)||(54570473-54570537)
chr4 (62-125)||(54570911-54570975)
chr4 (35-125)||(8652037-8652128)
chr4 (35-125)||(8663844-8663935)
chr4 (60-125)||(53751526-53751592)
chr4 (15-68)||(23538182-23538235)
[»] chr3 (1 HSPs)
chr3 (42-91)||(50354046-50354095)
[»] chr6 (3 HSPs)
chr6 (63-121)||(27120068-27120127)
chr6 (42-91)||(23383718-23383767)
chr6 (35-125)||(24848312-24848403)
[»] chr1 (4 HSPs)
chr1 (20-67)||(49195427-49195474)
chr1 (15-73)||(12606600-12606658)
chr1 (20-72)||(40908370-40908422)
chr1 (20-68)||(46566627-46566675)
[»] chr5 (1 HSPs)
chr5 (15-68)||(43469569-43469622)
[»] chr2 (1 HSPs)
chr2 (24-72)||(3081257-3081305)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 8811894 - 8811647
Alignment:
Q  19 agtggttggcagatgagattatcattaattacgtattagagagggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaa 117  Q
    ||||||| || |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||    
T  8811894 agtggttcgcggatgggattagcattaattacgtattagaaagggaaaatgaggatgaattagggctaacataccagcttgacaagtgtagcttttataa 8811795  T
Q  118 taaaggattaaaattaatggccattgactaacttttt-atacttactctaggagaaccaacaaatccctcttacacacaca--tacactatttttctcat 214  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||  |||||||||||||||||    
T  8811794 taaaggattaaatataatggccattgactaacttttttatacttactctaggagaaccaacgaatccctctcacacacacacatacactatttttctcat 8811695  T
Q  215 actcttgtcgtgtcagtgttgtgaggggtatgttctatattttctttg 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8811694 actcttgtcgtgtcagtgttgtgaggggtatgttctatattttctttg 8811647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 37447922 - 37448012
Alignment:
Q  8 gagatgaagggagtggttggcagatgagattatcattaattacgtattagagagggaaaatgaggatgaattagggctaacatgccagctt 98  Q
    |||||| ||| ||| ||||||||||| ||||  ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  37447922 gagatgtaggaagttgttggcagatgggattgacattaattacgtattagggaggaaaaatgaggatgaattagggctaacataccagctt 37448012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 25841177 - 25841265
Alignment:
Q  35 gattatcattaattacgtattagagagggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaag 122  Q
    ||||| ||||||||||||||||  ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| ||| ||||    
T  25841177 gattaacattaattacgtattacggagggaaaatgaggatggattagggctaacatgctagcttgacaagtgtagcttttataaaaaag 25841265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 10646072 - 10646125
Alignment:
Q  15 agggagtggttggcagatgagattatcattaattacgtattagagagggaaaat 68  Q
    |||| |||||||||||||||||||| ||||||||||| ||| | ||||||||||    
T  10646072 agggtgtggttggcagatgagattagcattaattacggatttgggagggaaaat 10646125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 54570473 - 54570537
Alignment:
Q  59 gagggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaag 122  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  54570473 gagggaaaatgaggataaattagggctaacatgccagcttgacaagtgtagcttttataataaag 54570537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 54570911 - 54570975
Alignment:
Q  62 ggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaaggat 125  Q
    ||||||||||||| | |||||||||||||||||||||  |||||||||||||| |||||||||||    
T  54570911 ggaaaatgaggataagttagggctaacatgccagcttggcaagtgtagcttttataataaaggat 54570975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 8652037 - 8652128
Alignment:
Q  35 gattatcattaattacgtattagagagggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaaggat 125  Q
    ||||| |||||||||||  |||| |||||||| |||| ||| |||||||| | ||||| |||||  ||||| |||||||| |||||||||||    
T  8652037 gattaacattaattacggtttagggagggaaactgagaatggattagggcaagcatgctagcttggcaagtctagcttttataataaaggat 8652128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 8663844 - 8663935
Alignment:
Q  35 gattatcattaattacgtattagagagggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaaggat 125  Q
    ||||| |||||||||||  |||| |||||||| |||| ||| |||||||| | ||||| |||||  ||||| |||||||| |||||||||||    
T  8663844 gattaacattaattacggtttagggagggaaactgagaatggattagggcaagcatgctagcttggcaagtctagcttttataataaaggat 8663935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 53751526 - 53751592
Alignment:
Q  60 agggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaaggat 125  Q
    |||||||||||| ||| |||||||| ||||||| ||||| |||||| || ||||| |||||||||||    
T  53751526 agggaaaatgagaatggattagggcaaacatgctagcttgacaagtctaacttttataataaaggat 53751592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 23538182 - 23538235
Alignment:
Q  15 agggagtggttggcagatgagattatcattaattacgtattagagagggaaaat 68  Q
    |||| |||||||||||||||||||| ||||||||||  ||||| |||| |||||    
T  23538182 agggtgtggttggcagatgagattagcattaattacagattagggaggaaaaat 23538235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 50354046 - 50354095
Alignment:
Q  42 attaattacgtattagagagggaaaatgaggatgaattagggctaacatg 91  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  50354046 attaattacgtattagggagggaaaatgaggatggattagggctaacatg 50354095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 27120068 - 27120127
Alignment:
Q  63 gaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaa 121  Q
    ||||||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||    
T  27120068 gaaaatgaggatgaattagggctaacatgtcagcttggcaagtgtagcttttataataaa 27120127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 23383767 - 23383718
Alignment:
Q  42 attaattacgtattagagagggaaaatgaggatgaattagggctaacatg 91  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  23383767 attaattacgtattagggagggaaaataaggatggattagggctaacatg 23383718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 24848312 - 24848403
Alignment:
Q  35 gattatcattaattacgtattagagagggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaaggat 125  Q
    ||||| |||||||||||  |||| ||| ||||||||| ||  |||||||| ||||||| |||||  ||||| |||||||| |||||||||||    
T  24848312 gattaacattaattacggtttagggagcgaaaatgagaatagattagggcaaacatgctagcttggcaagtctagcttttataataaaggat 24848403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 49195427 - 49195474
Alignment:
Q  20 gtggttggcagatgagattatcattaattacgtattagagagggaaaa 67  Q
    |||||||||||||||||||| ||||||||||  ||||| |||||||||    
T  49195427 gtggttggcagatgagattaacattaattacagattagggagggaaaa 49195474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 12606600 - 12606658
Alignment:
Q  15 agggagtggttggcagatgagattatcattaattacgtattagagagggaaaatgagga 73  Q
    |||| |||||||||||||| ||||| ||||||||| | ||||| |||||||||| ||||    
T  12606600 agggtgtggttggcagatgggattagcattaattatggattagggagggaaaataagga 12606658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 40908422 - 40908370
Alignment:
Q  20 gtggttggcagatgagattatcattaattacgtattagagagggaaaatgagg 72  Q
    |||||||||||||||||||| |||||| | | | |||| ||||||||||||||    
T  40908422 gtggttggcagatgagattaacattaaattcatgttagggagggaaaatgagg 40908370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 46566675 - 46566627
Alignment:
Q  20 gtggttggcagatgagattatcattaattacgtattagagagggaaaat 68  Q
    |||||||||||||||||||| ||||||||||  ||| | ||||||||||    
T  46566675 gtggttggcagatgagattagcattaattacaaatttgggagggaaaat 46566627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 43469569 - 43469622
Alignment:
Q  15 agggagtggttggcagatgagattatcattaattacgtattagagagggaaaat 68  Q
    |||| ||||||||||||||| |||| ||||||||||| ||| | ||||||||||    
T  43469569 agggtgtggttggcagatgaaattaacattaattacggatttgggagggaaaat 43469622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 3081305 - 3081257
Alignment:
Q  24 ttggcagatgagattatcattaattacgtattagagagggaaaatgagg 72  Q
    |||||||||||||||| |||||| | ||| |||| ||||||||||||||    
T  3081305 ttggcagatgagattaacattaaatgcgtgttagggagggaaaatgagg 3081257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University