View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6484_low_1 (Length: 933)
Name: NF6484_low_1
Description: NF6484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6484_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 826; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 826; E-Value: 0
Query Start/End: Original strand, 13 - 915
Target Start/End: Original strand, 43034648 - 43035549
Alignment:
| Q |
13 |
agcagagagagcaatgaagagagtagcatcaggcatgcaagtcacgtgccgtacccccacttgtacaacaggtttacttacttttccttcaccactcaca |
112 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43034648 |
agcagagagagcaatgaagagagcagcatcaggcatgcaagtcacgtgccgtacccccacttgtacaacaggtttacttacttttccttcaccactcaca |
43034747 |
T |
|
| Q |
113 |
gttgaacccatcacaaacccttcacccggtaaccactttgaacccaatattgcagaatcaatgcagaatttaccaccttttttcacactcactgtgcctt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43034748 |
gttgaacccatcacaaacccttcacccggtaaccactttgaacccaatattgcagaatcaatgcagaatttaccaccttttttcacactcactgtgcctt |
43034847 |
T |
|
| Q |
213 |
cagcaattggttttgcattaacaggtccattgtcagagaaaagctctatcttgtagcccaagccatcgataggacctctctctcaccatgcctcgagacg |
312 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
43034848 |
cagcaattggtattgcattaacaggtccattgtcagagaaaagctctaccttgtagcccaagccatcgataggacctctctctcgccatgcctcgagatg |
43034947 |
T |
|
| Q |
313 |
accccatgatttccagctacagctactcacagtggagcctccaattgagcggagaataacccacgcgcctgcgtttgatcgtgacacccgatctgagccg |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43034948 |
accccatgatttccagctacagctactcacagtggagcctccgatcgcgcggagaataacccacgcgcctgcgtttgatcgtgacacccgatctgagctg |
43035047 |
T |
|
| Q |
413 |
ggggatggaacaaatggtgtgatcatggatgctgcagcaacgggcgagcctgatagatcgtgaattactatcatccaaccctttctctcattcccttgtc |
512 |
Q |
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| T |
43035048 |
ggggatggaacaaatggtgtgatcatggatgctgcagcaacgggcgagcctgatagatcgtgaattactatcatccaaccctttctctcattcccttgtc |
43035147 |
T |
|
| Q |
513 |
cactgttctctttcacctctcaatggtcttctccatctgcttgaattattgtttgtagaatccgacgaaagaggcctgaattttcaagttggttaataaa |
612 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43035148 |
cgctgttctctttcacctctcaatggtcttctccatctgcttgaattattgtttgtagaatccgacgaaagaggcctgaattttcaagttggttaataaa |
43035247 |
T |
|
| Q |
613 |
atatnnnnnnnncatttaattgattgaagtaacaagcatgatcttctatagatagcttattaagtaacaagcatgatattctatagatagcttattataa |
712 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43035248 |
atat-aaaaaaacatttaattgattgaagtaacaagcatgatcttctatagatagcttattaagtaacaagcatgatattctatagatagcttattataa |
43035346 |
T |
|
| Q |
713 |
gctttggttgtagaaacaacttacacataagtatagaagtgtttttgagtaagtgttttattaagctatgtatccaaatgcctctcgagtgtaacaacat |
812 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43035347 |
gctttggttgtagaaacaacttacacataagtatagaagtgtttttgagtaactgttttattaagctatgtatccaaatgcctctcgagtgtaacaacat |
43035446 |
T |
|
| Q |
813 |
aatgaaattgttaaactgtgacaggagaatcagactcttgtattttcggtgtgccagagtatcaccaaagttgaataacaaattttcaaccgagtgattc |
912 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43035447 |
aatgaaattgttaaactgtgccaggagaatcagactcttgtattttcggtgtgccagagtatcaccaaagttgaataacaaattttcaaccgagtgattc |
43035546 |
T |
|
| Q |
913 |
tat |
915 |
Q |
| |
|
||| |
|
|
| T |
43035547 |
tat |
43035549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 385 - 498
Target Start/End: Complemental strand, 34193884 - 34193771
Alignment:
| Q |
385 |
gtttgatcgtgacacccgatctgagccgggggatggaacaaatggtgtgatcatggatgctgcagcaacgggcgagcctgatagatcgtgaattactatc |
484 |
Q |
| |
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|||||||| ||| || | ||||||||| ||||| || ||||||||||||| ||| || ||||||||||| || || || || |||||||||| | |||| |
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| T |
34193884 |
gtttgatcttgatactctatctgagccaggggaagggacaaatggtgtgaccattgaggctgcagcaaccggggaacccgagagatcgtgaactgttatc |
34193785 |
T |
|
| Q |
485 |
atccaaccctttct |
498 |
Q |
| |
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|||||||||||||| |
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|
| T |
34193784 |
atccaaccctttct |
34193771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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