View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6485_high_1 (Length: 573)
Name: NF6485_high_1
Description: NF6485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6485_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 26122516 - 26122194
Alignment:
| Q |
9 |
agcagagacccaggacggcaatgacttttgtcttcttttcaatgatgaatcaaacatagatgaagatgaagctattgagtttaggataaaactggggatt |
108 |
Q |
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| T |
26122516 |
agcagagactcagcaccgcaatgacttttgtcttcttttcaatgatgaatcaaacatagatgaagataaagctattgagtttaggataaatttggggatt |
26122417 |
T |
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| Q |
109 |
ataaacctcaaaatgtgactattacacaacgatcaccaaggatcacgtgttatttcccttttacaaattgttagtaagattgcaattgcatcatgaccaa |
208 |
Q |
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| T |
26122416 |
ataaaccttaaaatgtgactattacacaacgatcac----------gtgttatttcccttttacagattgttggtaagattgcaattgcatcatgaccaa |
26122327 |
T |
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| Q |
209 |
aaagtgtgtgacgatcgagcttttgatacaagtgtgctatgtgaaaattggaacaatgcaaactctgatgcttttgtagcttatatagatatagaagtga |
308 |
Q |
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| T |
26122326 |
aaagtgtgtgacgatcgagcttttgatacaagtgtgctgtgtgaaaattggaaaaatgcaaactctgatgcttttgtagcttata------tagaagtga |
26122233 |
T |
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| Q |
309 |
aaattctagcatggtttctttttagtagtattggatcac |
347 |
Q |
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| T |
26122232 |
aaattctagcatggtttctttttagtattactggatcac |
26122194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 351 - 555
Target Start/End: Complemental strand, 26122041 - 26121839
Alignment:
| Q |
351 |
tatggatatggtaaagtccgaaggttattcttaatatatataatcgatgtcgatttattagtgtcatgtcccgttattcatgtttatatcggtgtttcat |
450 |
Q |
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| T |
26122041 |
tatggatatggtaaaggccaaaggatattcttaatatatt--atcaatgtcgatttatcagtgtcatgtcccgttattcatgtttatatcggtgtttcat |
26121944 |
T |
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| Q |
451 |
agtgaactattggatcaatggcagctaggaaagatttacgattcatcggtttacaactgttgtagcattagatttagaagcaataatgacatttgttgag |
550 |
Q |
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| T |
26121943 |
agtgaactattggatcaatggcagctagggaatatttacgattcatcagtttacaaccattgtagcgtaagatttagaagcaataatgacatttgttgag |
26121844 |
T |
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| Q |
551 |
ttgtt |
555 |
Q |
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||||| |
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| T |
26121843 |
ttgtt |
26121839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 27 - 257
Target Start/End: Complemental strand, 26131793 - 26131577
Alignment:
| Q |
27 |
caatgacttttgtcttcttttcaatgatgaatcaaacatagatgaagatgaagctattgagtttaggataaaactggggattataaacctcaaaatgtga |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||| || ||||| |
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| T |
26131793 |
caatgacttttgtcttcttttcaatgatgaatcaaacatagatgaagatgaagctattgaatttgagataaaatttgggattataaaccttaagatgtgg |
26131694 |
T |
|
| Q |
127 |
ctattacacaacgatcaccaaggatcacgtgttatttcccttttacaaattgttagtaagattgcaattgcatcatgaccaaaaagtgtgtgacgatcga |
226 |
Q |
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| T |
26131693 |
ttgttgcacaaa--------------acgtattacttcccgtttacaatttgttagtaagattgaaattgcattatgaccaaaaagtgtgtgacggtcga |
26131608 |
T |
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| Q |
227 |
gcttttgatacaagtgtgctatgtgaaaatt |
257 |
Q |
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| T |
26131607 |
gcttttgatacaggtgtgctatgtgaaaatt |
26131577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 347
Target Start/End: Complemental strand, 26131585 - 26131543
Alignment:
| Q |
305 |
gtgaaaattctagcatggtttctttttagtagtattggatcac |
347 |
Q |
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| T |
26131585 |
gtgaaaattctagcatgatttctttttagtagtactggatcac |
26131543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 27502682 - 27502653
Alignment:
| Q |
35 |
tttgtcttcttttcaatgatgaatcaaaca |
64 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
27502682 |
tttgtcttcttttcaatgatgaatcaaaca |
27502653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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