View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6486_high_2 (Length: 489)
Name: NF6486_high_2
Description: NF6486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6486_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 11 - 475
Target Start/End: Original strand, 12829096 - 12829560
Alignment:
| Q |
11 |
caaaggagcaatgatttatcagcagcgattgcgaaacgagtttcttcctttcgacaatcggttgaagaggagaacgtgacagagttcaatctttctggac |
110 |
Q |
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| T |
12829096 |
caaaggagcaatgatttatcagcagcgattgcgaaacgagtttcttcctttcgacaatcggttgaagaggagaacgtgacagagttcaatctttcaggac |
12829195 |
T |
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| Q |
111 |
tcagagtcgtggtgaaaacgaaacctggagaagaagaagatgataagatgaaaggtagaatcacgttcttctcgaggtcaagttgtagagattgtaccgc |
210 |
Q |
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| T |
12829196 |
tcagagtcgtggtgaaaacgaaacctggagaagaagaagatgaaaagatgaaagggagaatcacgttcttctcgaggtcaagttgtagagattgtaccgc |
12829295 |
T |
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| Q |
211 |
agtgagaaaattcttcaaagagaaaaagctgaaattcgttgaaatcaacgtcgacgtgtttcgtgaacgagagaaggagctacgtcaaagaacgggaacg |
310 |
Q |
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| T |
12829296 |
agtgagaaaattcttcaaagagaaaaagctgaaattcgttgaaatcaacgtcgacgtgtttcgtgaacgagagaaggagctacgtgaaagaacgggaacg |
12829395 |
T |
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| Q |
311 |
gtttcggtgccgatgattttcttcaacgagaagctaataggaggattagtagctttaaattcgcttcgaaatagcggcgaatttgaacggaggttgacgg |
410 |
Q |
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| T |
12829396 |
gtttcggtgccgatgattttcttcaacgagaagctaataggaggattagtagcgttaaattcgcttcgaaatagcggcgaatttgaacggaggttgacgg |
12829495 |
T |
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| Q |
411 |
agatggtggtggaggaatacgccggtaacgatgcgccggtgccgccggtgtacggttgtgattat |
475 |
Q |
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| T |
12829496 |
agatggtggtggaggaatacgccgataacgatgcgccggtgccgccggtgtacggttgtgattat |
12829560 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 360
Target Start/End: Original strand, 13019702 - 13019739
Alignment:
| Q |
323 |
atgattttcttcaacgagaagctaataggaggattagt |
360 |
Q |
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| T |
13019702 |
atgattttcttcaacgacaagctaatcggaggattagt |
13019739 |
T |
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