View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6486_high_5 (Length: 235)
Name: NF6486_high_5
Description: NF6486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6486_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 52040416 - 52040625
Alignment:
| Q |
18 |
tcactcaagaaaggttagagaagctgacgaagagcgttgaagattcaaatttagaatttgttgaaggtagatatgatgaagaaaactcggagggaaattc |
117 |
Q |
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| T |
52040416 |
tcactcaagaaaggttagagaagctgacgaagagcgttgaagattcaaatttagaatttgttgaaggtagatatgatgaagaaaattcggagggaaattc |
52040515 |
T |
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| Q |
118 |
agagagtgtgttggtgagcgatggaataatagagcacagatttcatgaaaattcattaatttctcaattaagagtaagaacatcgacatctgaaaacatt |
217 |
Q |
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| T |
52040516 |
agagagtgtgttggtgagcgatggaataatagagcacagatttcatgaaaattcattaatttctcaattaagagtaagaacatcgacatctgaaaacatt |
52040615 |
T |
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| Q |
218 |
gttgatgatg |
227 |
Q |
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|||||||||| |
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| T |
52040616 |
gttgatgatg |
52040625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 18217316 - 18217248
Alignment:
| Q |
66 |
atttagaatttgttgaaggtagatatgatgaagaaaactcggagggaaattcagagagtgtgttggtga |
134 |
Q |
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|||||||||||| ||||||||| ||||| ||||||||||| || |||||||||||| |||| ||||||| |
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| T |
18217316 |
atttagaatttgctgaaggtagttatgaggaagaaaactcagaaggaaattcagagtgtgttttggtga |
18217248 |
T |
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