View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6486_low_1 (Length: 731)
Name: NF6486_low_1
Description: NF6486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6486_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 271 - 713
Target Start/End: Original strand, 40790508 - 40790950
Alignment:
| Q |
271 |
aacaggttttatgtcatgtcaataaataacttgacatatcactttcataacaaagatttcaacaagagacaaaaatactagattttaaaaaagagataat |
370 |
Q |
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| T |
40790508 |
aacaggttttatgtcatgtcaataaataacttgacatatcactttcataacaaagatttcaacaagagacaaaaatactagattttaaaaaagagataat |
40790607 |
T |
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| Q |
371 |
aaatttcatgagcaagtgaaaaagaagatcaattccaatttctgtgacttataagaaattatatccgtataaaatacaagaattgaaagcttgaaattgt |
470 |
Q |
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| T |
40790608 |
aaatttcatgagcaagtgaaaaagaagatcaattccaatttctgtgacttataagaaattatatccgtataaaatacaagaattgaaagcttgaaattgt |
40790707 |
T |
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| Q |
471 |
gtacaactttgtgaagaccatataatgatctcaatcaatcatgatcgatagatggggtcatcgatcaaaatactaaagattctttctcacttcagtgcta |
570 |
Q |
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| T |
40790708 |
gtacaactttgtgaagaccatataatgatctcaatcaatcatgatagatagatggggtcatcaatcaaaatactaaagattctttcttacttcagtgcta |
40790807 |
T |
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| Q |
571 |
aaaattccattcatgnnnnnnnncttcatatatatgtagatgtggccatacgtgggagaagggtccatataatatgcaaaggcatattgtaaaagatcct |
670 |
Q |
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| T |
40790808 |
aaaattccattcatgttttttttcttcatatatatgtagttgtggccatacgtgggagaagggtccatataatatgcaaaggcatattgtaaaagatcct |
40790907 |
T |
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| Q |
671 |
taattatcttacnnnnnnnnaatgatttgttccccaccaatat |
713 |
Q |
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| T |
40790908 |
taattatcttacttttttttaatgatttgttccccaccaatat |
40790950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 40787243 - 40787412
Alignment:
| Q |
1 |
gctggtattataacaga---tattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctataattgtcttttag |
97 |
Q |
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| T |
40787243 |
gctggtattataacagaagatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattt----------tcatttag |
40787332 |
T |
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| Q |
98 |
ttatgcctcataattcaaatcatgtgaagttcaaataaattttcgcatcaacttgaggtaatattgattctcgttacttc |
177 |
Q |
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| T |
40787333 |
ttatgcctcataattcaaatcatgtgaagtttaaataaattttcgcatgatcttgaggtaatattgattctcattacttc |
40787412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 4e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 15007638 - 15007803
Alignment:
| Q |
15 |
agatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctataattgtcttttagttatgcctcataattca |
114 |
Q |
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| T |
15007638 |
agatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctataattgtcttttagttaggcctcataattca |
15007737 |
T |
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| Q |
115 |
aatcatgtga---agttcaaataaattttcgcatcaacttgaggtaatattgattctcgttacttc |
177 |
Q |
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| T |
15007738 |
aatcatgtgaattagttcaaataaattttcgcatgaacttaaggtaatattgattcacattacttc |
15007803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 52311151 - 52311122
Alignment:
| Q |
148 |
acttgaggtaatattgattctcgttacttc |
177 |
Q |
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| T |
52311151 |
acttgaggtaatattgattctcgttacttc |
52311122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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