View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6486_low_3 (Length: 325)
Name: NF6486_low_3
Description: NF6486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6486_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 45097213 - 45096904
Alignment:
| Q |
1 |
ttagggatctcaaatgttcttaatacttaactcattggtgctacaaatgcagcataaagggctcatgagaaatatgcttgttttcttggctttcaagtct |
100 |
Q |
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| T |
45097213 |
ttagggatctcaaatgttcttaatactgaactcattggtgctacgaatgcagcatagagtgctcatgagaaatatgcttgttttcttggctttcaagtct |
45097114 |
T |
|
| Q |
101 |
tctaaggttgtcccttggccgttgattgaagaacagatgagagaattgtctctatttcatttcctctacgtccttctatttcattctattcacatttaca |
200 |
Q |
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| T |
45097113 |
tctaaggttgtcccgtggccgttgattgaagaacagatgagagaattgtctctatttcatttcctctacgtccttctatttcattctattcacatttaca |
45097014 |
T |
|
| Q |
201 |
gagcagtaaatcaatgtgctgattagcttgctaatcttcgtttaagtttgagttcttatgcttggtggtctcagttgcctaaccaaattagagacgatta |
300 |
Q |
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| T |
45097013 |
gagcagtaaatcaacgtgctgattagcttgctaatcttcgtttaagtttgagttcttatgcttggtggtttcagttgcctaaccaaattagagacgacta |
45096914 |
T |
|
| Q |
301 |
tattagaaat |
310 |
Q |
| |
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|||||||||| |
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| T |
45096913 |
tattagaaat |
45096904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 11775932 - 11775891
Alignment:
| Q |
78 |
ttgttttcttggctttcaagtcttctaaggttgtcccttggc |
119 |
Q |
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| T |
11775932 |
ttgttttcttagctttcaagtcttctaaggttgtcccttggc |
11775891 |
T |
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