View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6486_low_6 (Length: 241)
Name: NF6486_low_6
Description: NF6486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6486_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 4393796 - 4393573
Alignment:
| Q |
18 |
gtagtaacattttgagtctgaaaatatgtttggttttgattcacagaagcagttggagaattaggcacaacatcattgatgttagggaaaccaagggaaa |
117 |
Q |
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| T |
4393796 |
gtagtaacattttgagtctgaaaatatgtttggttttgattcacagaagcagttggagaattaggcacaacatcattgatgttagggaaaccaagggaaa |
4393697 |
T |
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| Q |
118 |
atactttggcaggtattaattcttttggtggagatttctcagaggaagatgaagaagatgagggtacagtagcagaaatttgagaaagtgaattagggtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4393696 |
atactttggcaggtattaattcttttggtggagatttctcagaggaagatgaagaagatgagggtacagtagcagaaatttgagaaagtgaattagggtt |
4393597 |
T |
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| Q |
218 |
ttgttgtggtggttgatcttgatt |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
4393596 |
ttgttgtggtggttgatcttgatt |
4393573 |
T |
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