View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6487_high_11 (Length: 444)
Name: NF6487_high_11
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 11498739 - 11498315
Alignment:
| Q |
18 |
tacacatacctatgcaatgtaggtaagaatagaaagcatgtgctgtttgcataataatacatataatagttcagaccatgataagcatgtgatgctttgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11498739 |
tacacatacctatgcaatgtaggtaagaatagaaagcatgtgctgtttgcataataatacatataatagttcagaccatgataagcatgtgatgctttgc |
11498640 |
T |
|
| Q |
118 |
atcatagcttaaatctcactaaaataatttaaaagatgctacacatctgtctgtctttttgttttacacgttaaat----aaattgaggtttgttatact |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
11498639 |
atcatagcttaaatctcactaaaataatttaaaagatgctacacatctgtctgtctttttgttttacacgttaaataaataaattgagttttgctatact |
11498540 |
T |
|
| Q |
214 |
cactttcattttgttgtgatttcttctaaacc--tattcttcttgttgttcttgttacaaacaaagctctacgaatggcgactattatgaaggtgtcagc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| || ||| ||||||||||| |
|
|
| T |
11498539 |
cactttcattttgttgtgatttcttctaaacctatattcttgttgttgttcttgttacaaacaaagatctacgaatggcggctcttaggaaggtgtcagt |
11498440 |
T |
|
| Q |
312 |
gttgttagcgaagcttgattctggtgagttcgtggacaacttccggagcatgaagcttgacttttcagtcttgaaaaagctgaagaaatcattgctgagg |
411 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11498439 |
gttgttagagaagcttgattctggtgagtttgtggacaacttccggagcatgaagcttgacttttcagtcttgaaaaagctgaagaaatcattgctgagg |
11498340 |
T |
|
| Q |
412 |
gttccaaatgtacttgatgatgatg |
436 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
11498339 |
gttccaaatgtacttgatgatgatg |
11498315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 399
Target Start/End: Original strand, 16446096 - 16446183
Alignment:
| Q |
312 |
gttgttagcgaagcttgattctggtgagttcgtggacaacttccggagcatgaagcttgacttttcagtcttgaaaaagctgaagaaa |
399 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||| | || ||||||| ||||||||| |||| |||||| ||||||||||||| |
|
|
| T |
16446096 |
gttgttagaaaagcttgtttctggtgagttcgtggatgattttcggagcacaaagcttgacgattcactcttgacaaagctgaagaaa |
16446183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University