View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_high_13 (Length: 384)
Name: NF6487_high_13
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 369
Target Start/End: Original strand, 46640122 - 46640478
Alignment:
| Q |
13 |
tcatcacaccaatctctaccaccactaaacccaagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640122 |
tcatcacaccaatctctaccaccactaaacccaagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaaca |
46640221 |
T |
|
| Q |
113 |
ccaccttaaactggtatggcccaaatgtatgcaactacacaggtatcttttgtgcaccgtcactagatgatccttacatcaataccgttgctggtataga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640222 |
ccaccttaaactggtatggcccaaatgtatgcaactacacaggtatcttttgtgcaccgtcactagatgatccttacatcaataccgttgctggtataga |
46640321 |
T |
|
| Q |
213 |
cataaaccatgcaaacatagcaggttcattaccagaagaacttggtcttttaatagacttagctcttttccacataaactcaaaccgtttctatggttca |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640322 |
cataaaccatgcaaacatagcaggttcattaccagaagaacttggtcttttaacagacatagctcttttccacataaactcaaaccgtttctatggttca |
46640421 |
T |
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| Q |
313 |
ctccccaatagtttcaaccaccttcaccttctccatgagctagacatcagtaacaac |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640422 |
ctccccaatagtttcaaccaccttcaccttctccatgagctagacatcagtaacaac |
46640478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 369
Target Start/End: Original strand, 46642414 - 46642770
Alignment:
| Q |
13 |
tcatcacaccaatctctaccaccactaaacccaagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaaca |
112 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642414 |
tcatcacaccaatctctaccaccactaaatccaagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaaca |
46642513 |
T |
|
| Q |
113 |
ccaccttaaactggtatggcccaaatgtatgcaactacacaggtatcttttgtgcaccgtcactagatgatccttacatcaataccgttgctggtataga |
212 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642514 |
ccactttaaactggtatggcccaaatgtatgcaactacacaggtatcatttgtgcaccgtcactagatgatccttacatcaataccgttgctggtataga |
46642613 |
T |
|
| Q |
213 |
cataaaccatgcaaacatagcaggttcattaccagaagaacttggtcttttaatagacttagctcttttccacataaactcaaaccgtttctatggttca |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642614 |
cataaaccatgcaaacatagcaggttcattaccagaagaacttggtcttttaacagacatagctcttttccacataaactcaaaccgtttctatggttca |
46642713 |
T |
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| Q |
313 |
ctccccaatagtttcaaccaccttcaccttctccatgagctagacatcagtaacaac |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46642714 |
ctccccaatagtttcaaccaccttcaccttctccatgagctagacatcagtaacaac |
46642770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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