View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_high_14 (Length: 376)
Name: NF6487_high_14
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 38420218 - 38419889
Alignment:
| Q |
19 |
gtttctgggtttattttctttggacaaactctcgttcggcttttttatgcaacatattttactttcatattttgagctaatattactttccaaaatattt |
118 |
Q |
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| T |
38420218 |
gtttctgggtttattttctttggacaaactctcgttcggcttttttatgcaacatattttactttcatattttgagctaatattactttccaaaatattt |
38420119 |
T |
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| Q |
119 |
tgtatcattagtatgcataacttatattttgaacccttnnnnnnnncttttattttgaagaaattatcatataaaagaaaagaaggaattcacgtataat |
218 |
Q |
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| T |
38420118 |
tgtatcattagtgtgcataacttatattttgaacccttaaaaaaaacttttattttgaagaaattatcatataaaagaaaagaaggaattcacgtataat |
38420019 |
T |
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| Q |
219 |
tatttcatannnnnnngaaaggtcgtgtataattattatactcactttattttctaattttgttacttatattgattacgaatt----aagttaacacat |
314 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38420018 |
tattgcatatttttttgaaaggtcgtgtataattattatactcactttattttctaattttgttacttatattgattacgaattaagtaagttaacacat |
38419919 |
T |
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| Q |
315 |
tttgtcaattttctcatccaaatcttatta |
344 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38419918 |
tttgtcaattttctcatccaaatcttatta |
38419889 |
T |
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