View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6487_high_17 (Length: 360)

Name: NF6487_high_17
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6487_high_17
NF6487_high_17
[»] chr2 (22 HSPs)
chr2 (120-297)||(9357924-9358101)
chr2 (75-286)||(9316788-9316999)
chr2 (80-288)||(9060271-9060479)
chr2 (80-290)||(9292699-9292906)
chr2 (9-288)||(8572675-8572953)
chr2 (80-230)||(10372653-10372800)
chr2 (80-230)||(9321762-9321909)
chr2 (119-230)||(9329406-9329517)
chr2 (138-262)||(10336637-10336761)
chr2 (131-262)||(10348622-10348753)
chr2 (1-66)||(9357854-9357919)
chr2 (78-230)||(10353914-10354063)
chr2 (132-250)||(12018125-12018243)
chr2 (131-262)||(7114844-7114975)
chr2 (133-262)||(9283373-9283502)
chr2 (132-216)||(12011838-12011922)
chr2 (77-198)||(14551088-14551205)
chr2 (131-257)||(9275342-9275468)
chr2 (132-198)||(7612716-7612782)
chr2 (131-253)||(12005373-12005495)
chr2 (132-211)||(9365415-9365494)
chr2 (136-216)||(11986770-11986850)
[»] scaffold0667 (1 HSPs)
scaffold0667 (5-288)||(5155-5435)
[»] chr3 (1 HSPs)
chr3 (80-282)||(37463293-37463492)
[»] chr8 (1 HSPs)
chr8 (6-259)||(41965924-41966174)
[»] chr4 (2 HSPs)
chr4 (80-262)||(26575650-26575829)
chr4 (132-191)||(561990-562049)
[»] chr1 (4 HSPs)
chr1 (71-196)||(29442624-29442746)
chr1 (96-196)||(29452616-29452713)
chr1 (77-196)||(29467090-29467206)
chr1 (77-196)||(29423982-29424098)
[»] chr5 (1 HSPs)
chr5 (133-198)||(36225571-36225636)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 9e-89; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 120 - 297
Target Start/End: Original strand, 9357924 - 9358101
Alignment:
Q  120 ttgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgatttta 219  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9357924 ttgatggaattatttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgatttta 9358023  T
Q  220 ctggtaagcggaacaaaatttcagcgagtatttccggcggaaggcggtcaacagccattggaaggaaggttgttagga 297  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9358024 ctggtaagcggaacaaaattttggcgagtatttccggcggaaggcggtcaacagccattggaaggaaggttgttagga 9358101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 75 - 286
Target Start/End: Original strand, 9316788 - 9316999
Alignment:
Q  75 tcgatttggtagatatcgaatttgtgtcgaaggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaagg 174  Q
    |||||||||||||  ||| ||||||   ||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||| |    
T  9316788 tcgatttggtagagttcggatttgtaatgaaggattaaggatcgattgagggaattatttttgaggtgaaggttgatgaagttgtgagaatctattaaag 9316887  T
Q  175 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaaggcggtcaacagc 274  Q
    ||||||||||||||||||||||||  || |||||||||||||||||||||||| || | || ||||| |||||||||||||||||||| | |||| | ||    
T  9316888 atttaagtgattttgaagttgatcggaatcggagaagtgattttactggtaagtgggagaagatttcggcgagtatttccggcggaagaccgtcagccgc 9316987  T
Q  275 cattggaaggaa 286  Q
    ||||||||||||    
T  9316988 cattggaaggaa 9316999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 80 - 288
Target Start/End: Complemental strand, 9060479 - 9060271
Alignment:
Q  80 ttggtagatatcgaatttgtgtcgaaggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggattta 179  Q
    |||||||| |||| ||||||||||||||||||   ||||||||| || |||||||||||||| ||||||  ||||||||| |||||||||||||||||||    
T  9060479 ttggtagagatcggatttgtgtcgaaggattataaatcgattgaggggattatttttgaggtaaaggttagtgaagttgtgagaatcgattaaggattta 9060380  T
Q  180 agtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaaggcggtcaacagccattg 279  Q
    |||||||||||||||||||  || |||||||||||||  || ||||||||| | || ||||| || |||||||||||||||||    ||| | |||||||    
T  9060379 agtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagcgggagaagatttcggcaagtatttccggcggaagaacatcagccgccattg 9060280  T
Q  280 gaaggaagg 288  Q
    |||||||||    
T  9060279 gaaggaagg 9060271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 80 - 290
Target Start/End: Original strand, 9292699 - 9292906
Alignment:
Q  80 ttggtagatatcgaatttgtgtcgaaggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggattta 179  Q
    |||||||| ||||||||||||||||||||||||| |||| |||| ||||||   |||||||||||||||  ||||| ||| ||||||||||| |||||||    
T  9292699 ttggtagagatcgaatttgtgtcgaaggattaaggatcggttgagggaatt---tttgaggtgaaggttagtgaagctgtgagaatcgattagggattta 9292795  T
Q  180 agtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaaggcggtcaacagccattg 279  Q
    |||||||||||| ||||||  || | |||||||||||||||||||| |||| | || ||||| |||| |||||| ||||||||||||||  | ||||| |    
T  9292796 agtgattttgaaattgatcggaatctgagaagtgattttactggtacgcgggagaagatttcggcgactatttctggcggaaggcggtccgccgccatcg 9292895  T
Q  280 gaaggaaggtt 290  Q
    ||| |||||||    
T  9292896 gaaagaaggtt 9292906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 8572953 - 8572675
Alignment:
Q  9 ttggtggtgttacgcgtgaaagggtggttgagtggaa---cggcggtggtgaagtttgagagatcatcttcgatttggtagatatcgaatttgtgtcgaa 105  Q
    |||||| ||||||  | |||||| |||||||||||||   |||||||||| |  |  |||| |||||| |||||||||||||||||| | ||| ||||||    
T  8572953 ttggtgctgttaccggagaaaggatggttgagtggaaactcggcggtggttagatcagagaaatcatcatcgatttggtagatatcgtagttgcgtcgaa 8572854  T
Q  106 ggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatccaaaccg 205  Q
     ||||||| | ||||||| ||||||   |||||||||||||||  |||||||||  ||||||||||  |||||||||||||||||||||||||  || ||    
T  8572853 tgattaaggaacgattgagggaatt---tttgaggtgaaggttggtgaagttgtgggaatcgattatagatttaagtgattttgaagttgatcggaatcg 8572757  T
Q  206 gagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaaggcggtcaacagccattggaaggaagg 288  Q
    ||||||||| |||||||||| |||| | || ||||||| || |||||||| ||||||    ||| | ||||||||||||||||    
T  8572756 gagaagtga-tttactggtatgcgggagaagatttcagtgactatttccgacggaagaacatcacccgccattggaaggaagg 8572675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 10372653 - 10372800
Alignment:
Q  80 ttggtagatatcgaatttgtgtcgaaggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggattta 179  Q
    |||||||| |||||||||| || ||||||||||| ||||||||| ||||||   || |||||||||||| ||||| ||||  ||||||||||| ||||||    
T  10372653 ttggtagagatcgaatttgcgttgaaggattaaggatcgattgagggaatt---ttggaggtgaaggttgatgaatttgtgggaatcgattaatgattta 10372749  T
Q  180 agtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 230  Q
    | |||||||||||||||||  || ||||||||||||||||| |||||||||    
T  10372750 aatgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgg 10372800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 9321762 - 9321909
Alignment:
Q  80 ttggtagatatcgaatttgtgtcgaaggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggattta 179  Q
    |||||||| ||||||||||||| ||| ||||||| ||||| ||| ||||||   |||||| |||||||| ||||||| || ||||||||||| |||||||    
T  9321762 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatt---tttgagatgaaggttgatgaagtggtgagaatcgattatggattta 9321858  T
Q  180 agtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 230  Q
    |||||||| ||||||||||  ||  |||||||||||||||| |||||||||    
T  9321859 agtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgg 9321909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 9329406 - 9329517
Alignment:
Q  119 attgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgatttt 218  Q
    ||||| ||||||||||||||||||||||||  |||||||||  |||||||||| |||||||||||||||||||||||| |  || |||||||||||||||    
T  9329406 attgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgatttt 9329505  T
Q  219 actggtaagcgg 230  Q
    || |||||||||    
T  9329506 accggtaagcgg 9329517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 138 - 262
Target Start/End: Original strand, 10336637 - 10336761
Alignment:
Q  138 aggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaa 237  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |||||||  || ||||||||||||||||| ||||| ||| | || |    
T  10336637 aggtgaaggttgatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaaacgggagaaga 10336736  T
Q  238 tttcagcgagtatttccggcggaag 262  Q
    |||| | ||| ||||||||||||||    
T  10336737 tttcggagagaatttccggcggaag 10336761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 131 - 262
Target Start/End: Original strand, 10348622 - 10348753
Alignment:
Q  131 atttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 230  Q
    |||||| ||||||||||| ||||| |||   ||||||||||||||||||||||||||||| |||||||  || ||||||||||||||||| |||||||||    
T  10348622 attttttaggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgg 10348721  T
Q  231 aacaaaatttcagcgagtatttccggcggaag 262  Q
     | || ||||| ||||| || |||||||||||    
T  10348722 gagaagatttcggcgagaatatccggcggaag 10348753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 9357854 - 9357919
Alignment:
Q  1 gagaaatgttggtggtgttacgcgtgaaagggtggttgagtggaacggcggtggtgaagtttgaga 66  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9357854 gagaaatgttggtgctgttacgcgtgaaagggtggttgagtggaacggcggtggtgaagtttgaga 9357919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 10353914 - 10354063
Alignment:
Q  78 atttggtagatatcgaatttgtgtcgaaggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatt 177  Q
    |||||||||||||||||||||  |||||| |||||| || |||||  ||||||   | ||||||||||||| ||||| ||||  |||||||||| |||||    
T  10353914 atttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatt---tctgaggtgaaggttgatgaatttgttggaatcgattagggatt 10354010  T
Q  178 taagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 230  Q
    ||| |||||||||||||||||  || | |||||||||| |||| |||||||||    
T  10354011 taaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgg 10354063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 12018243 - 12018125
Alignment:
Q  132 tttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgga 231  Q
    |||||||| ||||| ||  ||||||||| ||||||||||| |||||||||||||||||||||||| |  || || ||||||||||||||||||||||||     
T  12018243 tttttgagttgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagcggg 12018144  T
Q  232 acaaaatttcagcgagtat 250  Q
    | || ||||| ||||||||    
T  12018143 agaagatttcggcgagtat 12018125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 131 - 262
Target Start/End: Complemental strand, 7114975 - 7114844
Alignment:
Q  131 atttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 230  Q
    |||||| || |||||||| ||||| ||||  |||||||||||||||||||||||||||||||||||||  || || |||||||||  |||||||| |||     
T  7114975 atttttaagatgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgatcgtactggtaggcga 7114876  T
Q  231 aacaaaatttcagcgagtatttccggcggaag 262  Q
     | || ||||| |  |||||||||||||||||    
T  7114875 gagaagatttcggatagtatttccggcggaag 7114844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 262
Target Start/End: Complemental strand, 9283502 - 9283373
Alignment:
Q  133 ttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaa 232  Q
    |||||||||||||||| ||||| |||| |||||| |||| ||||  ||||||||| ||||||||||  || ||||| |||||||| |||||||||| | |    
T  9283502 ttttgaggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactggtaagcagga 9283403  T
Q  233 caaaatttcagcgagtatttccggcggaag 262  Q
     || ||||| || ||||| |||||||||||    
T  9283402 gaagatttcggcaagtatgtccggcggaag 9283373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 12011922 - 12011838
Alignment:
Q  132 tttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgatt 216  Q
    |||||||||||||| ||  ||||||||| ||||||||||| |||||||||||||||||||||||| |  || |||||||||||||    
T  12011922 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgatt 12011838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 14551088 - 14551205
Alignment:
Q  77 gatttggtagatatcgaatttgtgtcgaaggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggat 176  Q
    ||||||||||| || | | |||||||||||||||||| | | ||||| |||||| ||    |||||||| || ||||||||||  |||||||||| ||||    
T  14551088 gatttggtagagattggacttgtgtcgaaggattaaggaacaattgagggaattttt----aggtgaagtttgatgaagttgtgggaatcgattagggat 14551183  T
Q  177 ttaagtgattttgaagttgatc 198  Q
    | ||||||||||||||||||||    
T  14551184 tgaagtgattttgaagttgatc 14551205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 257
Target Start/End: Original strand, 9275342 - 9275468
Alignment:
Q  131 atttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 230  Q
    ||||||||| |||||||| ||||||||||  ||||| || || |||||||||||||||||  ||||||  || | ||||||||||| ||||||||| |||    
T  9275342 atttttgagatgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtactggtaaccgg 9275441  T
Q  231 aacaaaatttcagcgagtatttccggc 257  Q
     | || ||||| ||  |||||||||||    
T  9275442 gagaagatttcggcaggtatttccggc 9275468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 7612716 - 7612782
Alignment:
Q  132 tttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatc 198  Q
    |||||||||||||||||| |||||||||  ||||| |||||||||||||| ||||| ||| ||||||    
T  7612716 tttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatc 7612782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 253
Target Start/End: Complemental strand, 12005495 - 12005373
Alignment:
Q  131 atttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 230  Q
    |||||| || ||||||||  ||||||||| ||||||||||| ||||||||| |||| ||||||||| |  || ||||||||||||| |   |||||||||    
T  12005495 attttttagatgaaggttggtgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggaggtaagcgg 12005396  T
Q  231 aacaaaatttcagcgagtatttc 253  Q
     | || ||||| | |||||||||    
T  12005395 gagaagatttcggtgagtatttc 12005373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 9365415 - 9365494
Alignment:
Q  132 tttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaag 211  Q
    |||||||| || |||||  ||||| ||| ||||||||||| |||||||||||||||||| |||||||  || ||||||||    
T  9365415 tttttgagatggaggttggtgaaggtgtgagaatcgattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 11986850 - 11986770
Alignment:
Q  136 tgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgatt 216  Q
    |||||||||| ||  ||||||||| |||||| |||| ||||||||| |||| ||||||||| |  || |||||||||||||    
T  11986850 tgaggtgaagattggtgaagttgtgagaatcaattatggatttaagcgattctgaagttgagcggaatcggagaagtgatt 11986770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 5 - 288
Target Start/End: Original strand, 5155 - 5435
Alignment:
Q  5 aatgttggtggtgttacgcgtgaaagggtggttgagtggaacggcggtggtgaagtttgagagatcatcttcgatttggtagatatcgaatttgtgtcga 104  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | || || |||||    
T  5155 aatgttggtgctgttacgcgtgaaagggtggttgagtggaacggcggtggtgaggtttgagaaatcatcttcgatttggtagatattggatctgagtcga 5254  T
Q  105 aggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatccaaacc 204  Q
    ||||| ||| ||| ||||| ||||||   |||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||  || |    
T  5255 aggatgaaggatctattgagggaatt---tttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaatc 5351  T
Q  205 ggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaaggcggtcaacagccattggaaggaagg 288  Q
    |||||||||||||||| ||||||||| | || ||||| |||||| | ||||||||||||||||||   ||||||||||||||||    
T  5352 ggagaagtgattttaccggtaagcgggagaagatttctgcgagtgtgtccggcggaaggcggtcagacgccattggaaggaagg 5435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 80 - 282
Target Start/End: Original strand, 37463293 - 37463492
Alignment:
Q  80 ttggtagatatcgaatttgtgtcgaaggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggattta 179  Q
    ||||||||||||| | |||| ||||| ||||| | || |||||| || |||   |||||| |||||||| |||||||||| |||||||||||| ||||||    
T  37463293 ttggtagatatcggagttgtttcgaatgattacggattgattgaggggatt---tttgagatgaaggttgatgaagttgtgagaatcgattaaagattta 37463389  T
Q  180 agtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaaggcggtcaacagccattg 279  Q
    |||||||||||||||||||  || ||||||||||||| ||||||||| ||| | |  ||||| |||||||||||||||||||| | |||| | |||||||    
T  37463390 agtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaagaccgtcatccgccattg 37463489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 6 - 259
Target Start/End: Complemental strand, 41966174 - 41965924
Alignment:
Q  6 atgttggtggtgttacgcgtgaaagggtggttgagtggaacggcggtggtgaagtttgagagatcatcttcgatttggtagatatcgaatttgtgtcgaa 105  Q
    ||||||||| ||| ||||  |||||| ||||||||||||||||||||||| | ||| |||| ||| || ||||  ||||||| |||    ||| ||||||    
T  41966174 atgttggtgctgtgacgcaagaaaggatggttgagtggaacggcggtggttaggttagagaaatcctcatcgaactggtagagatcagtgttgagtcgaa 41966075  T
Q  106 ggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatccaaaccg 205  Q
    |||||||| ||||||||| ||| ||   | ||||||||||||| ||||||||||  |||||||||||||||  ||||||||| || |||||||  || ||    
T  41966074 ggattaaggatcgattgagggattt---tctgaggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcg 41965978  T
Q  206 gagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcgg 259  Q
    ||||| ||||||||| |||||  || | || ||||||||||||||||| |||||    
T  41965977 gagaactgattttaccggtaatagggagaagatttcagcgagtatttctggcgg 41965924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 80 - 262
Target Start/End: Original strand, 26575650 - 26575829
Alignment:
Q  80 ttggtagatatcgaatttgtgtcgaaggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggattta 179  Q
    |||||||||||||||||||  ||||||||||||| ||||||||  ||||||   | ||||||||||||| ||||| ||||  |||||||||||| |||||    
T  26575650 ttggtagatatcgaatttgaatcgaaggattaaggatcgattgggggaatt---tctgaggtgaaggttgatgaatttgtaggaatcgattaagaattta 26575746  T
Q  180 agtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaag 262  Q
    |||||||||||||||||||  || |||||||||||| |||| ||||| ||| | || ||||| | ||| |||||||| |||||    
T  26575747 agtgattttgaagttgatcggaatcggagaagtgatattaccggtaaacgggagaagatttcggtgagaatttccggtggaag 26575829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 561990 - 562049
Alignment:
Q  132 tttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaa 191  Q
    |||||||||||||||||  |||||||||  |||||||||| |||||||||  ||||||||    
T  561990 tttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagccattttgaa 562049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 29442746 - 29442624
Alignment:
Q  71 atcttcgatttggtagatatcgaatttgtgtcgaaggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgatt 170  Q
    ||||||||||||||||| ||| || |||||||||||||||||| | ||||||| ||||  ||||| ||||||||| || |||||||| |  |||||||||    
T  29442746 atcttcgatttggtagaaatcaaagttgtgtcgaaggattaaggaacgattga-ggaa--attttggaggtgaagtttgatgaagttatgggaatcgatt 29442650  T
Q  171 aaggatttaagtgattttgaagttga 196  Q
    | ||||| ||||||||| || |||||    
T  29442649 agggattgaagtgatttcgacgttga 29442624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 29452713 - 29452616
Alignment:
Q  96 ttgtgtcgaaggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttg 195  Q
    |||||||||||||||||| | ||||||| ||||||   || ||||||||| || |||||||||| ||||||||||| ||||| |||||||||||| ||||    
T  29452713 ttgtgtcgaaggattaaggaacgattgagggaatt---ttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttg 29452617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 29467206 - 29467090
Alignment:
Q  77 gatttggtagatatcgaatttgtgtcgaaggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggat 176  Q
    ||||||||||| |||| | |||||||||||||||||| | ||||||| ||||||   |  ||||||||| || ||||||||||  |||||||||| ||||    
T  29467206 gatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatt---tcggaggtgaagtttgatgaagttgtgggaatcgattagggat 29467110  T
Q  177 ttaagtgattttgaagttga 196  Q
    | |||||||||||| |||||    
T  29467109 tgaagtgattttgaggttga 29467090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 29423982 - 29424098
Alignment:
Q  77 gatttggtagatatcgaatttgtgtcgaaggattaagtatcgattgatggaattatttttgaggtgaaggtttatgaagttgtcagaatcgattaaggat 176  Q
    ||||||||||| |||  | |||||||||||||||||| | ||||||| |||||||   | ||||||||| || |||||| |||  ||||||||||  |||    
T  29423982 gatttggtagaaatcagagttgtgtcgaaggattaaggaacgattgaaggaatta---tggaggtgaagcttgatgaagctgtgggaatcgattagagat 29424078  T
Q  177 ttaagtgattttgaagttga 196  Q
    | |||||||||||| |||||    
T  29424079 tgaagtgattttgaggttga 29424098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 36225571 - 36225636
Alignment:
Q  133 ttttgaggtgaaggtttatgaagttgtcagaatcgattaaggatttaagtgattttgaagttgatc 198  Q
    ||||||||||||| ||  |||||||||  ||||||||||| |||||||||||||||||||||||||    
T  36225571 ttttgaggtgaagattagtgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatc 36225636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University