View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_high_21 (Length: 339)
Name: NF6487_high_21
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 53126840 - 53127162
Alignment:
| Q |
1 |
atagaatgtcaatcttataaaactaaaaagtgttacaaacatgattattaggcactacacaacaagcacaacttaacataatgataatctgaatattttt |
100 |
Q |
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| T |
53126840 |
atagaatgtcaatcttataaaactaaaaagtgttacaaacatgattattcggcactacacaacaagcacaacttaacataatgataatctgaatattttt |
53126939 |
T |
|
| Q |
101 |
atggtaaatttcaaaaaggaatgt-gttgaaacgtatt-accggcacatgttttttcttgagcaagcttgtaaatgaggagggcaactcctaatgcatgc |
198 |
Q |
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| T |
53126940 |
atggtaaatttcaaaaaggaatgttgttgaaacgtatttaccggcacatgttttttcttgagcaagcttgtaaatgaggagggcaactcctaatgcatgc |
53127039 |
T |
|
| Q |
199 |
acaaactcagcagctacgaagagattgtcgtggtcgtgaacgatcattctaagaaaaaccaaagctgcaatgcccgaaagaatcgccagaaaaaccttca |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
53127040 |
acaaactcagcagctacgaagagattgtcgtggtcgtgaacgatcattctaagaaaaaccaaagctgcaatgcccgaaagaatcgccagaaacaacttca |
53127139 |
T |
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| Q |
299 |
tcttcggcggttgccggcgaagc |
321 |
Q |
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||||||||||||||||||||||| |
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| T |
53127140 |
tcttcggcggttgccggcgaagc |
53127162 |
T |
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