View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_high_22 (Length: 332)
Name: NF6487_high_22
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_high_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 9116168 - 9115854
Alignment:
| Q |
18 |
aagtacaaggagtgatatattattgcatttaaattgaagccaaatattgacattgttactctttgtgcagggttatgcaaaaccaaatgggaaaaaaggg |
117 |
Q |
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| T |
9116168 |
aagtacaaggagtgatatattattgcatttaaattcaagcaaaatattgacattgttactctttgtgcagggttatgcaaaaccaaatgggaaaaaaagg |
9116069 |
T |
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| Q |
118 |
ggaaattaacagctggggactatgagtacaatgatgtcaatctttcaggaaaacgttacataatcgaagtttcccttgctgctgaattcgaaatagctcg |
217 |
Q |
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| T |
9116068 |
ggaaattaacagctggggactatgagtacattgatgtcaatctttcaggaaaacgttacataatcgaagtttcccttgctgctgaattcgaaatagctcg |
9115969 |
T |
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| Q |
218 |
accaacaaaccaatattcttctttgctaaatatttttccaaagatttttgttggtaaaatggaagaactaaaaagaattgtgaggctaatgtgctctgca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
9115968 |
accaacaaaccaatattcttctttgctaaatatttttccaaagatttttgttggtaaaatggaagaactcaagagaattgtgaggctaatgtgctctgca |
9115869 |
T |
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| Q |
318 |
atcaaaggctcaatg |
332 |
Q |
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| T |
9115868 |
atcaaaggctcaatg |
9115854 |
T |
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