View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6487_high_3 (Length: 646)

Name: NF6487_high_3
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6487_high_3
NF6487_high_3
[»] chr3 (1 HSPs)
chr3 (1-635)||(36422674-36423308)


Alignment Details
Target: chr3 (Bit Score: 619; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 1 - 635
Target Start/End: Complemental strand, 36423308 - 36422674
Alignment:
Q  1 tagaaattgacagtgcctttgcttgaataacactgcaccttaatcaatcttctactctcttcaactggtgttccataccaccctgaagcgactggaaggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  36423308 tagaaattgacagtgcctttgcttgaataacactgcaccttaatcaatcttctattctcttcaaccggtgttccataccaccctgaagcgactggaaggc 36423209  T
Q  101 atgcaaggtctgctaaattcacaccgcgttttctaatcgtgctgttaaactcgccactcttcaatggaacattgagtacagcaaccatttcctcaagtgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36423208 atgcaaggtctgctaaattcacaccgcgttttctaatcgtgctgttaaactcgccactcttcaatggaacatcgagtacagcaaccatttcctcaagtgt 36423109  T
Q  201 cattgtagggtatccagaagaacctggccttgtttcatggttggttatttcacttgtgctaagatcaacagtgagagtgtgagtgacacgtttatcaagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36423108 cattgtagggtatccagaagaacctggccttgtttcatggttggttatttcacttgtgctaagatcaacagtgagagtgtgagtgacacgtttatcaagt 36423009  T
Q  301 gcaaccacagaggctttcctaggaagtaatggttgaccatttttccatttgaggacaagttctttgtctggttcttctagaacaatggaattgagagtgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36423008 gcaaccacagaggctttcctaggaagtaatggttgaccatttttccatttgaggacaagttctttgtctggttcttctagaacaatggaattgagagtgt 36422909  T
Q  401 aactgtttgaggacttaaaaagagggtgtgtcgagaggatcgcacgaactttgttgaattcttggatggttagagggtctaaagggtggcgaggttcatc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36422908 aactgtttgaggacttaaaaagagggtgtgtcgagaggatcgcacgaactttgttgaattcttggatggttagagggtctaaagggtggcgaggttcatc 36422809  T
Q  501 ggattcatggtttggttgttgatggcgagtggagaaggatggtttgtggattggatttgaagattgaaaacggttctttgaggtgcaccatccagagaag 600  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36422808 ggattcatggtttggttgttgacggcgagtggagaaggatggtttgtggattggatttgaagattgaaaacggttctttgaggtgcaccatccagagaag 36422709  T
Q  601 atgttgcagtctagagcttctttgttgaatgatga 635  Q
    |||||||||||||||||||||||||||||||||||    
T  36422708 atgttgcagtctagagcttctttgttgaatgatga 36422674  T

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