View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6487_high_32 (Length: 258)

Name: NF6487_high_32
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6487_high_32
NF6487_high_32
[»] chr3 (30 HSPs)
chr3 (11-258)||(28531052-28531300)
chr3 (11-70)||(4222164-4222223)
chr3 (25-68)||(31520613-31520656)
chr3 (13-70)||(4844507-4844564)
chr3 (13-70)||(4870203-4870260)
chr3 (11-68)||(10445133-10445190)
chr3 (13-70)||(51903874-51903931)
chr3 (25-69)||(31788978-31789022)
chr3 (26-69)||(11090174-11090217)
chr3 (12-70)||(2667885-2667943)
chr3 (12-70)||(36720404-36720462)
chr3 (25-70)||(7975441-7975486)
chr3 (13-70)||(10499105-10499162)
chr3 (12-69)||(13808880-13808937)
chr3 (29-66)||(44743867-44743904)
chr3 (14-70)||(30311329-30311385)
chr3 (11-62)||(2709408-2709459)
chr3 (31-70)||(46518651-46518690)
chr3 (15-70)||(47454615-47454670)
chr3 (11-70)||(53412968-53413027)
chr3 (31-69)||(27259185-27259223)
chr3 (11-69)||(28703398-28703456)
chr3 (12-66)||(30510194-30510248)
chr3 (29-67)||(31608536-31608574)
chr3 (29-70)||(8051237-8051278)
chr3 (33-70)||(9557343-9557380)
chr3 (29-70)||(21960574-21960615)
chr3 (37-70)||(40063642-40063675)
chr3 (11-63)||(39253727-39253779)
chr3 (11-67)||(53863862-53863917)
[»] scaffold0299 (1 HSPs)
scaffold0299 (11-70)||(11551-11610)
[»] scaffold0118 (1 HSPs)
scaffold0118 (11-70)||(41627-41686)
[»] scaffold0258 (1 HSPs)
scaffold0258 (13-70)||(15319-15376)
[»] chr8 (16 HSPs)
chr8 (13-70)||(968385-968442)
chr8 (14-70)||(11492070-11492126)
chr8 (15-70)||(2203515-2203570)
chr8 (11-70)||(6536543-6536602)
chr8 (15-70)||(16852363-16852418)
chr8 (11-70)||(23361643-23361702)
chr8 (11-70)||(35690058-35690117)
chr8 (13-70)||(15948045-15948102)
chr8 (15-67)||(3524399-3524451)
chr8 (29-69)||(31087270-31087310)
chr8 (12-70)||(30483879-30483937)
chr8 (13-70)||(3624603-3624660)
chr8 (33-70)||(7140732-7140769)
chr8 (29-70)||(29858061-29858102)
chr8 (37-69)||(6569791-6569823)
chr8 (18-70)||(25389479-25389531)
[»] chr6 (9 HSPs)
chr6 (13-70)||(33549127-33549184)
chr6 (29-70)||(31623003-31623044)
chr6 (31-70)||(24641204-24641243)
chr6 (16-70)||(30127423-30127477)
chr6 (29-70)||(6776619-6776660)
chr6 (29-70)||(11423589-11423630)
chr6 (29-70)||(34786466-34786507)
chr6 (29-69)||(3172780-3172820)
chr6 (42-70)||(11597918-11597946)
[»] chr4 (19 HSPs)
chr4 (11-68)||(37274453-37274510)
chr4 (11-63)||(28635726-28635778)
chr4 (11-70)||(37109345-37109404)
chr4 (11-70)||(38869791-38869850)
chr4 (15-66)||(39509097-39509148)
chr4 (12-69)||(23377980-23378037)
chr4 (13-70)||(51948503-51948560)
chr4 (11-70)||(7949448-7949507)
chr4 (15-70)||(30938217-30938272)
chr4 (11-70)||(33632130-33632189)
chr4 (15-70)||(47044740-47044795)
chr4 (15-70)||(55427198-55427253)
chr4 (16-70)||(41346962-41347016)
chr4 (11-68)||(2622389-2622446)
chr4 (29-70)||(9241037-9241078)
chr4 (29-70)||(17618304-17618345)
chr4 (29-70)||(19238589-19238630)
chr4 (13-66)||(38838824-38838877)
chr4 (14-70)||(33619229-33619285)
[»] chr1 (14 HSPs)
chr1 (14-70)||(15786317-15786373)
chr1 (11-70)||(6650618-6650677)
chr1 (11-70)||(8177176-8177235)
chr1 (11-70)||(9165189-9165248)
chr1 (11-70)||(33700767-33700826)
chr1 (13-69)||(12587294-12587350)
chr1 (11-70)||(2799885-2799944)
chr1 (11-70)||(10526846-10526905)
chr1 (11-70)||(36371493-36371552)
chr1 (31-70)||(44046162-44046201)
chr1 (16-70)||(40257422-40257476)
chr1 (29-70)||(25494081-25494122)
chr1 (37-70)||(52336794-52336827)
chr1 (14-70)||(31383795-31383851)
[»] scaffold0180 (1 HSPs)
scaffold0180 (11-70)||(19956-20015)
[»] chr7 (15 HSPs)
chr7 (11-70)||(26459404-26459463)
chr7 (12-70)||(39631867-39631925)
chr7 (29-70)||(25590634-25590675)
chr7 (29-70)||(48771961-48772002)
chr7 (29-69)||(26703149-26703189)
chr7 (14-70)||(30442511-30442567)
chr7 (13-68)||(17041008-17041063)
chr7 (15-70)||(19553477-19553531)
chr7 (15-70)||(20335829-20335884)
chr7 (12-70)||(43215207-43215265)
chr7 (13-70)||(5668567-5668624)
chr7 (29-70)||(28236593-28236634)
chr7 (29-70)||(45709720-45709761)
chr7 (31-67)||(5934147-5934183)
chr7 (11-67)||(17212076-17212131)
[»] chr5 (15 HSPs)
chr5 (11-70)||(16773830-16773889)
chr5 (11-70)||(29075804-29075863)
chr5 (11-70)||(34984829-34984888)
chr5 (29-70)||(14495817-14495858)
chr5 (11-67)||(30000142-30000198)
chr5 (11-70)||(27596350-27596409)
chr5 (15-70)||(30883196-30883251)
chr5 (11-70)||(43442219-43442278)
chr5 (29-66)||(84851-84888)
chr5 (29-70)||(1410671-1410712)
chr5 (29-70)||(4793100-4793141)
chr5 (13-62)||(12883871-12883920)
chr5 (11-68)||(14285186-14285243)
chr5 (13-70)||(29692382-29692439)
chr5 (14-70)||(17761352-17761408)
[»] chr2 (11 HSPs)
chr2 (11-70)||(16918572-16918631)
chr2 (11-58)||(41202285-41202332)
chr2 (34-70)||(41504953-41504989)
chr2 (14-70)||(42327392-42327448)
chr2 (15-70)||(39715015-39715070)
chr2 (13-70)||(3677349-3677406)
chr2 (33-70)||(6760910-6760947)
chr2 (25-70)||(42602577-42602622)
chr2 (26-70)||(1729839-1729883)
chr2 (13-69)||(4262298-4262354)
chr2 (14-62)||(27244339-27244387)
[»] scaffold1367 (1 HSPs)
scaffold1367 (12-70)||(835-893)
[»] scaffold0194 (1 HSPs)
scaffold0194 (13-70)||(13042-13099)
[»] scaffold0009 (1 HSPs)
scaffold0009 (29-70)||(19859-19900)
[»] scaffold0021 (1 HSPs)
scaffold0021 (30-70)||(157000-157040)
[»] scaffold0063 (1 HSPs)
scaffold0063 (27-70)||(35399-35442)
[»] scaffold0002 (1 HSPs)
scaffold0002 (11-70)||(94965-95024)
[»] scaffold0172 (1 HSPs)
scaffold0172 (29-70)||(15789-15830)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 28531052 - 28531300
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatacgaagaattttttaccttgttgcagtatcaacatatgatct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28531052 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatacgaagaattttttaccttgttgcagtatcaacatatgatct 28531151  T
Q  111 atatactaagnnnnnnn-gtttgaaaagaataataattagcgtatttttaaatgcaatcagttattcatgcatatatcttgttatttatttggtaaatta 209  Q
    ||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  28531152 atatactaagaaaaaaaagtttgaaaagaataataattagcgtatttttaaatgcaatcagttattcaagcatatatattgttatttatttggtaaatta 28531251  T
Q  210 agtgtaattcttgctgcagcagatttacttatgccatacttcgcaattt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28531252 agtgtaattcttgctgcagcagatttacttatgccatacttcgcaattt 28531300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 4222223 - 4222164
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || |||||||| | ||||||||||| |||||||||||||||||||||||    
T  4222223 cagagagaatcgaacctaagactttgaggaggagcacactcccagatcccaagccaatac 4222164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 31520613 - 31520656
Alignment:
Q  25 cctaagacctcgaggaggagcatactcccagatcccaagccaat 68  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  31520613 cctaagacctcgaggaggagcacactcccagatcccaagccaat 31520656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 4844507 - 4844564
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||| || ||| |||||||||||||||||| |||||||||||||||| ||||||    
T  4844507 gagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaatac 4844564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 4870203 - 4870260
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||| || ||| |||||||||||||||||| |||||||||||||||| ||||||    
T  4870203 gagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaatac 4870260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 10445133 - 10445190
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaat 68  Q
    |||||||||| || ||| |||||||||||||||||| |||||||| ||||||||||||    
T  10445133 cagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaat 10445190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 51903874 - 51903931
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||| || ||| ||||| |||||||||||| |||||||||||||||||||||||    
T  51903874 gagagaatcgaacctgagaccacgaggaggagcacactcccagatcccaagccaatac 51903931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 31788978 - 31789022
Alignment:
Q  25 cctaagacctcgaggaggagcatactcccagatcccaagccaata 69  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  31788978 cctaaaacctcgaggaggagcacactcccagatcccaagccaata 31789022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 11090174 - 11090217
Alignment:
Q  26 ctaagacctcgaggaggagcatactcccagatcccaagccaata 69  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  11090174 ctaagacctcgaggaggagcacattcccagatcccaagccaata 11090217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 2667943 - 2667885
Alignment:
Q  12 agagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||| ||| || ||| |||||||||||| ||||| |||||||||||||||||||||||    
T  2667943 agagataatcgaacctgagacctcgaggaagagcacactcccagatcccaagccaatac 2667885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 36720462 - 36720404
Alignment:
Q  12 agagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||| || ||| | |||||||||||||||| ||||||| |||||||||||||||    
T  36720462 agagagaatcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaatac 36720404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 7975486 - 7975441
Alignment:
Q  25 cctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| ||||||||||| |||||||||||||||||| ||||    
T  7975486 cctaagaccttgaggaggagcacactcccagatcccaagcctatac 7975441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 10499105 - 10499162
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||| || ||| ||||||| |||| ||||| |||||||||||||||||||||||    
T  10499105 gagagaatcgaacctgagacctcaaggaagagcagactcccagatcccaagccaatac 10499162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 13808880 - 13808937
Alignment:
Q  12 agagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaata 69  Q
    |||||||||||| ||| |||||| ||||||||||| ||| |||||||||||| |||||    
T  13808880 agagagaattgaacctgagacctagaggaggagcacactgccagatcccaagtcaata 13808937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 44743867 - 44743904
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagcca 66  Q
    |||||||||||||||||| |||||||||||||||||||    
T  44743867 agacctcgaggaggagcacactcccagatcccaagcca 44743904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 30311385 - 30311329
Alignment:
Q  14 agagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||| || ||| |||||| ||||||||||| |||||||||||||||||| ||||    
T  30311385 agagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagcctatac 30311329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 2709459 - 2709408
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaa 62  Q
    ||||||||||  | ||||| |||||||||||||||||||| |||||||||||    
T  2709459 cagagagaatcaaacctaaaacctcgaggaggagcatacttccagatcccaa 2709408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 46518690 - 46518651
Alignment:
Q  31 acctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  46518690 accttgaggaggagcacactcccagatcccaagccaatac 46518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 47454615 - 47454670
Alignment:
Q  15 gagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||| || ||| |||||||||||||||||| ||||| ||||| |||||||||||    
T  47454615 gagaatcgaacctgagacctcgaggaggagcacactccaagatctcaagccaatac 47454670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 53413027 - 53412968
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||||||| ||| |||||| ||||||||||| |||||||| |  |||||||||||    
T  53413027 cagagagaattgaacctgagaccttgaggaggagcacactcccaggttacaagccaatac 53412968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 27259223 - 27259185
Alignment:
Q  31 acctcgaggaggagcatactcccagatcccaagccaata 69  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  27259223 acctcgaggaggagcacactcccaggtcccaagccaata 27259185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 28703398 - 28703456
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaata 69  Q
    |||||||||| || ||| |||||| || |||||||| ||||||||||||||||| ||||    
T  28703398 cagagagaatcgaacctgagaccttgaagaggagcacactcccagatcccaagctaata 28703456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 30510194 - 30510248
Alignment:
Q  12 agagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagcca 66  Q
    ||||||||| || ||| |||||||||| ||||||||||||| || ||||||||||    
T  30510194 agagagaatcgaacctgagacctcgagaaggagcatactcctaggtcccaagcca 30510248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 31608536 - 31608574
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaa 67  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  31608536 agacctcgaggaggagcacactcccagatctcaagccaa 31608574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 8051278 - 8051237
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||||||| |||||||| |||| ||||||||||||||    
T  8051278 agacctcgaggagaagcatactgccaggtcccaagccaatac 8051237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 9557380 - 9557343
Alignment:
Q  33 ctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  9557380 ctcgaggaggagcacactctcagatcccaagccaatac 9557343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 21960615 - 21960574
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||||||| |||| ||| ||||||||||||||    
T  21960615 agacctcgaggaggagcacactctcaggtcccaagccaatac 21960574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 40063675 - 40063642
Alignment:
Q  37 aggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||||||||| ||||||||||||||||||    
T  40063675 aggaggagcatactctcagatcccaagccaatac 40063642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 39253779 - 39253727
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaag 63  Q
    |||||||||| || ||| |||||| || |||||||| ||||||||||||||||    
T  39253779 cagagagaatcgaacctgagaccttgaagaggagcacactcccagatcccaag 39253727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 53863862 - 53863917
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaa 67  Q
    ||||||||||||| |||||||||| || |||||||| ||||| || |||||||||||    
T  53863862 cagagagaattgaacctaagaccttga-gaggagcacactccaaggtcccaagccaa 53863917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 11610 - 11551
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || ||| |||||||||||||||||| |||||||||||||||||||||||    
T  11610 cagagagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaatac 11551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 41627 - 41686
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||    
T  41627 cagagagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaatac 41686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 15319 - 15376
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||| || ||| |||||||||||||||||| |||||||| ||||||||||||||    
T  15319 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 15376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 968442 - 968385
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||| || ||| |||||||||||||||||| |||||||| ||||||||||||||    
T  968442 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 968385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 11492070 - 11492126
Alignment:
Q  14 agagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||| || |||||||||||||| ||||||| ||||||||||| |||||||||||    
T  11492070 agagaatcgaacctaagacctcgagaaggagcacactcccagatctcaagccaatac 11492126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 2203570 - 2203515
Alignment:
Q  15 gagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||| ||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  2203570 gagaattgaccctgagaccttgaggaggagcacactcccaggtcccaagccaatac 2203515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 6536602 - 6536543
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||||||| ||| |||||| ||||||||||| ||||| || ||||||||||||||    
T  6536602 cagagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaatac 6536543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 16852418 - 16852363
Alignment:
Q  15 gagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||| || ||| |||||||||||||||||| |||||||| ||||||||||||||    
T  16852418 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 16852363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 23361643 - 23361702
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||||||| ||| |||||| ||||||||||| ||||||| |||||||| ||||||    
T  23361643 cagagagaattgaacctgagaccttgaggaggagcacactcccatatcccaagtcaatac 23361702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 35690058 - 35690117
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || ||| |||||| ||||||||||| || ||||||||||||||||||||    
T  35690058 cagagagaatcgaacctgagaccttgaggaggagcaaacacccagatcccaagccaatac 35690117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 15948045 - 15948102
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||| || |||| ||| |||||||||||||||||||||  ||||||||||||||    
T  15948045 gagagaatcgaacctatgacatcgaggaggagcatactcccaagtcccaagccaatac 15948102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 3524399 - 3524451
Alignment:
Q  15 gagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaa 67  Q
    ||||||||| |||||||||| ||||||||||| ||||| || |||||||||||    
T  3524399 gagaattgaacctaagaccttgaggaggagcacactccaaggtcccaagccaa 3524451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 31087270 - 31087310
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaata 69  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  31087270 agacctcgaggagggggatactcccagatcccaagccaata 31087310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 30483879 - 30483937
Alignment:
Q  12 agagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||| ||| ||||   ||||||||||| ||||||| |||||||||||||||    
T  30483879 agagagaattgaacctgagactctgaggaggagcacactcccatatcccaagccaatac 30483937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 3624660 - 3624603
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||| || ||| |||||| || |||||||| |||||||| ||||||||||||||    
T  3624660 gagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaatac 3624603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 7140769 - 7140732
Alignment:
Q  33 ctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||| || ||||||||||||||||||||    
T  7140769 ctcgaggaggagcacacacccagatcccaagccaatac 7140732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 29858061 - 29858102
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||||||| |||||| | ||||||||||||||    
T  29858061 agacctcgaggaggagcacactccctggtcccaagccaatac 29858102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 6569791 - 6569823
Alignment:
Q  37 aggaggagcatactcccagatcccaagccaata 69  Q
    |||||||||| ||||||||||||||||||||||    
T  6569791 aggaggagcacactcccagatcccaagccaata 6569823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 25389531 - 25389479
Alignment:
Q  18 aattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||| ||||||| || || |||||||||||||| || ||||||||||||||    
T  25389531 aattgaacctaagatcttgaagaggagcatactcctaggtcccaagccaatac 25389479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 33549184 - 33549127
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||| || ||| |||||||||||||||||| |||||||| ||||||||||||||    
T  33549184 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 33549127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 31623003 - 31623044
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  31623003 agacctcgaggaggagcacactcccaggtcccaagccaatac 31623044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 24641204 - 24641243
Alignment:
Q  31 acctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  24641204 acctcgaggaggagcacactcccagatcccaagtcaatac 24641243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 30127477 - 30127423
Alignment:
Q  16 agaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||| || ||| ||||||||| |||||||| ||||||||| |||||||||||||    
T  30127477 agaatcgaacctgagacctcgaagaggagcacactcccagaccccaagccaatac 30127423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 6776619 - 6776660
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||| ||||||||||||| || ||||||||||||||||||||    
T  6776619 agacatcgaggaggagcacacccccagatcccaagccaatac 6776660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 11423630 - 11423589
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||||||| |||||||||||| |||||||| ||||||    
T  11423630 agacctcgaggagaagcatactcccaaatcccaagtcaatac 11423589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 34786466 - 34786507
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||| ||||| ||||||| |||||||||||||||||||||||    
T  34786466 agacttcgagaaggagcacactcccagatcccaagccaatac 34786507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 3172780 - 3172820
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaata 69  Q
    ||||||||| ||||||||||||||||| ||||||| |||||    
T  3172780 agacctcgatgaggagcatactcccaggtcccaagtcaata 3172820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 11597946 - 11597918
Alignment:
Q  42 gagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||||||||||||||||||    
T  11597946 gagcatactcccagatcccaagccaatac 11597918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 37274453 - 37274510
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaat 68  Q
    |||||||||| || |||||||||| ||||||||||| |||||||| ||||||||||||    
T  37274453 cagagagaatcgaacctaagaccttgaggaggagcacactcccaggtcccaagccaat 37274510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 28635778 - 28635726
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaag 63  Q
    |||||||||| || ||||||||||| |||||||||| ||||||||||||||||    
T  28635778 cagagagaatcgaacctaagacctccaggaggagcacactcccagatcccaag 28635726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 37109345 - 37109404
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || ||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  37109345 cagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 37109404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 38869850 - 38869791
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||| |||| || ||| |||||| ||||||||||| |||||||||||||||||||||||    
T  38869850 cagagggaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatac 38869791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 39509148 - 39509097
Alignment:
Q  15 gagaattgagcctaagacctcgaggaggagcatactcccagatcccaagcca 66  Q
    |||||| || ||| |||||||||||||||||| |||||||||||||||||||    
T  39509148 gagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagcca 39509097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 23378037 - 23377980
Alignment:
Q  12 agagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaata 69  Q
    ||||||||| || ||| |||||| ||||||||||| |||||||| |||||||||||||    
T  23378037 agagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaata 23377980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 51948560 - 51948503
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||||| ||| |||||||||||||| ||| ||||| |||||||||| ||||||    
T  51948560 gagagaattgaacctgagacctcgaggaggggcacactcctagatcccaagtcaatac 51948503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 7949448 - 7949507
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || ||| |||||| ||||||||||| ||||| || ||||||||||||||    
T  7949448 cagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatac 7949507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 30938217 - 30938272
Alignment:
Q  15 gagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||| || ||| |||||||||||||||||| ||||| ||||||||| |||||||    
T  30938217 gagaatcgaacctgagacctcgaggaggagcacactccaagatcccaaaccaatac 30938272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 33632130 - 33632189
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || |||  ||||| ||||||||||||||||||| || ||||||||||||    
T  33632130 cagagagaatcgatcctgggaccttgaggaggagcatactcccatattccaagccaatac 33632189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 47044795 - 47044740
Alignment:
Q  15 gagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||| || ||| |||||||||||||||||| |||| ||||||||||| ||||||    
T  47044795 gagaatcgaacctgagacctcgaggaggagcaaactctcagatcccaagtcaatac 47044740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 55427198 - 55427253
Alignment:
Q  15 gagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||| || ||| |||||||||| ||||||| |||||||| ||||||||||||||    
T  55427198 gagaatcgaacctgagacctcgagcaggagcagactcccaggtcccaagccaatac 55427253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 41346962 - 41347016
Alignment:
Q  16 agaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||| || ||| |||| ||||||||||||||||||||||||| ||| |||||||    
T  41346962 agaatcgaacctgagacttcgaggaggagcatactcccagatctcaaaccaatac 41347016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 2622389 - 2622446
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaat 68  Q
    |||||||||| || ||| |||| | ||||||||||| |||||||| ||||||||||||    
T  2622389 cagagagaatcgaacctgagacatggaggaggagcacactcccaggtcccaagccaat 2622446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 9241037 - 9241078
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| ||||||| ||| |||||||||||||||||||    
T  9241037 agacctcgagcaggagcacactaccagatcccaagccaatac 9241078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 17618345 - 17618304
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||||||| |||||||| || |||||||||||    
T  17618345 agacctcgaggaggagcacactcccaggtctcaagccaatac 17618304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 19238589 - 19238630
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||||||| |||||||  ||||||||||||||    
T  19238589 agacctcgaggaggagcacactcccaagtcccaagccaatac 19238630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 38838877 - 38838824
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagcca 66  Q
    |||||||| || |||||||||| ||||||||||||||||| ||| | |||||||    
T  38838877 gagagaatcgaacctaagaccttgaggaggagcatactccaagagctcaagcca 38838824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 33619285 - 33619229
Alignment:
Q  14 agagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||| || ||||||||||| ||||||| ||  ||||||||||| ||||||||||    
T  33619285 agagaatcgaacctaagacctcaaggaggaccacgctcccagatcctaagccaatac 33619229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 15786317 - 15786373
Alignment:
Q  14 agagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||| || ||| |||||| ||||||||||| |||||||||||||||||||||||    
T  15786317 agagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatac 15786373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 6650677 - 6650618
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || ||| |||| | |||||||||||||||||| ||||||||||||||||    
T  6650677 cagagagaatcgaacctgagacattgaggaggagcatactccccgatcccaagccaatac 6650618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 8177176 - 8177235
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || ||| | |||| ||||||||||| |||||||||||||||||||||||    
T  8177176 cagagagaatcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaatac 8177235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 9165189 - 9165248
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||||||| ||| |||| | ||||||||||| |||||||| ||||||||||||||    
T  9165189 cagagagaattgaacctgagactttgaggaggagcacactcccaggtcccaagccaatac 9165248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 33700767 - 33700826
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || ||| |||||| ||||||||||| |||||||||| ||||||||||||    
T  33700767 cagagagaatcgaacctgagaccttgaggaggagcacactcccagattccaagccaatac 33700826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 12587350 - 12587294
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaata 69  Q
    |||||||| || ||| |||||||||||||||||| |||| ||||||||||| |||||    
T  12587350 gagagaatcgaacctgagacctcgaggaggagcacactcacagatcccaagtcaata 12587294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 2799944 - 2799885
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || ||| |||||| ||||||||||| ||||||||||| |||||| ||||    
T  2799944 cagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagcctatac 2799885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 10526905 - 10526846
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| ||  || |||||| ||||||||||| |||||||| ||||||||||||||    
T  10526905 cagagagaatcgaatctgagaccttgaggaggagcaaactcccaggtcccaagccaatac 10526846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 36371552 - 36371493
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || ||| |||||| ||||||||||| |||||||| | ||||||||||||    
T  36371552 cagagagaatcgaacctcagaccttgaggaggagcacactcccaggttccaagccaatac 36371493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 44046162 - 44046201
Alignment:
Q  31 acctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  44046162 accttgaggaggagcacactcccagatcccaagccaatac 44046201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 40257476 - 40257422
Alignment:
Q  16 agaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||| | | |||||||||||||||||| |||||||| || |||||||||||    
T  40257476 agaattgaacttgagacctcgaggaggagcacactcccaggtctcaagccaatac 40257422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 25494081 - 25494122
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||||||| |||| ||||| |||||||||||||||||    
T  25494081 agacctcgaggagaagcaaactcctagatcccaagccaatac 25494122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 52336794 - 52336827
Alignment:
Q  37 aggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| |||||||||||||||||||||||    
T  52336794 aggaggagcacactcccagatcccaagccaatac 52336827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 31383795 - 31383851
Alignment:
Q  14 agagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||| || ||| ||||| | |||||||||| |||||||| ||||||||||||||    
T  31383795 agagaatcgaacctgagaccccaaggaggagcacactcccaggtcccaagccaatac 31383851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 19956 - 20015
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || ||| |||||| |||||||||||||||||||| | ||||||||||||    
T  19956 cagagagaatcgaacctgagaccttgaggaggagcatactcccaggttccaagccaatac 20015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 26459404 - 26459463
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || ||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  26459404 cagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 26459463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 39631925 - 39631867
Alignment:
Q  12 agagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||| || ||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  39631925 agagagaatcgaacctgagaccttgaggaggagcttactcccaggtcccaagccaatac 39631867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 25590675 - 25590634
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  25590675 agacctcgaggaggagcacactcccagatctcaagccaatac 25590634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 48772002 - 48771961
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  48772002 agacctcaaggaggagcacactcccagatcccaagccaatac 48771961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 26703189 - 26703149
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaata 69  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  26703189 agacctcgagaaggagcacactcccagatcccaagccaata 26703149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 30442567 - 30442511
Alignment:
Q  14 agagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||| || ||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  30442567 agagaatcgaacctcagaccttgaggaggagcaaactcccaggtcccaagccaatac 30442511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 17041008 - 17041063
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaat 68  Q
    |||||||| || ||| |||||| ||||||||||| ||| |||||||||||||||||    
T  17041008 gagagaatcgaacctgagaccttgaggaggagcacacttccagatcccaagccaat 17041063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 19553531 - 19553477
Alignment:
Q  15 gagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||| |||||||||| ||||||||||| |||||||| | ||||||||||||    
T  19553531 gagaattgaacctaagaccttgaggaggagcacactcccaggt-ccaagccaatac 19553477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 20335829 - 20335884
Alignment:
Q  15 gagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||| || ||| |||||||||||||||||| |||||||  ||||||||||||||    
T  20335829 gagaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatac 20335884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 43215265 - 43215207
Alignment:
Q  12 agagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||| || ||| |||||| ||||||||||| ||||| || ||||||||||||||    
T  43215265 agagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatac 43215207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 5668567 - 5668624
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||| || ||| |||||||||||||||||| ||| |||  ||||||||||||||    
T  5668567 gagagaatcgatcctgagacctcgaggaggagcacacttccatgtcccaagccaatac 5668624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 28236593 - 28236634
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||||||  |||||||| ||||||||||||||    
T  28236593 agacctcgaggaggagcgcactcccaggtcccaagccaatac 28236634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 45709720 - 45709761
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||||||| |||| |||||||||||| |||||    
T  45709720 agacctcgaggaggagcacactctcagatcccaagctaatac 45709761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 5934183 - 5934147
Alignment:
Q  31 acctcgaggaggagcatactcccagatcccaagccaa 67  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  5934183 acctcaaggaggagcacactcccagatcccaagccaa 5934147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 17212131 - 17212076
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaa 67  Q
    ||||||||||||| ||| |||||||  ||||||||| ||||| ||||||||||||||    
T  17212131 cagagagaattgaacctgagacctct-ggaggagcaaactccaagatcccaagccaa 17212076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 16773889 - 16773830
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || ||| |||||||||||||||||| |||||||| ||||||| ||||||    
T  16773889 cagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaatac 16773830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 29075863 - 29075804
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || | | ||| |||||||||||||| |||||||||||||||||||||||    
T  29075863 cagagagaatcgaacatgagatctcgaggaggagcacactcccagatcccaagccaatac 29075804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 34984888 - 34984829
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || |||||||||| ||||||||||| |||||||| | ||||||||||||    
T  34984888 cagagagaatcgaacctaagaccttgaggaggagcacactcccaggttccaagccaatac 34984829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 14495817 - 14495858
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  14495817 agacctcgaggaggagcacactcccagatcccaagtcaatac 14495858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 30000198 - 30000142
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaa 67  Q
    |||||||| | || ||| |||||||||||||| |||||||||| |||||||||||||    
T  30000198 cagagagagtcgaacctgagacctcgaggaggtgcatactcccggatcccaagccaa 30000142  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 27596409 - 27596350
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| ||  ||||||||||||||||||| | |||| |||||||||||| |||||    
T  27596409 cagagagaatcgaatctaagacctcgaggaggaggacactctcagatcccaagctaatac 27596350  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 30883196 - 30883251
Alignment:
Q  15 gagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||| | | |||||| ||||||||||| |||||||| ||||||||||||||    
T  30883196 gagaattgaacttgagaccttgaggaggagcacactcccaggtcccaagccaatac 30883251  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 43442278 - 43442219
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| || ||| |||||| ||||||||||| ||||||||||| ||| |||||||    
T  43442278 cagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaaaccaatac 43442219  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 84888 - 84851
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagcca 66  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  84888 agaccttgaggaggagcacactcccagatcccaagcca 84851  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 1410671 - 1410712
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||||||| ||||||| |||||||| ||||||    
T  1410671 agacctcgaggaggagcacactcccatatcccaagtcaatac 1410712  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 4793100 - 4793141
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||||||| |||||||| |||||| |||||||    
T  4793100 agacctcgaggaggagcacactcccaggtcccaaaccaatac 4793141  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 12883920 - 12883871
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaa 62  Q
    ||||||||||| | | ||||||| |||||||||| |||||||||||||||    
T  12883920 gagagaattgaacatgagacctcaaggaggagcacactcccagatcccaa 12883871  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 14285243 - 14285186
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaat 68  Q
    |||||||||| || ||| |||||| ||||||||||| |||||||| | ||||||||||    
T  14285243 cagagagaatcgaacctgagaccttgaggaggagcacactcccaggttccaagccaat 14285186  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 29692382 - 29692439
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||| | ||| |||| | ||||||||||| ||||||||||||||| |||||||    
T  29692382 gagagaattaaacctgagactttgaggaggagcacactcccagatcccaatccaatac 29692439  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 17761352 - 17761408
Alignment:
Q  14 agagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||| || ||||| || || |||||||||| |||||||||||||||||| ||||    
T  17761352 agagaatcgatcctaaaacttcaaggaggagcacactcccagatcccaagccgatac 17761408  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 16918572 - 16918631
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||||  | |||||||||| ||||||||||| ||||||||||||||| |||||||    
T  16918572 cagagagaatccaacctaagaccttgaggaggagcacactcccagatcccaaaccaatac 16918631  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 41202332 - 41202285
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatc 58  Q
    |||||| |||||| |||||||| |||||||||||||||||||||||||    
T  41202332 cagagaaaattgaacctaagacttcgaggaggagcatactcccagatc 41202285  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 41504953 - 41504989
Alignment:
Q  34 tcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||||||||||||||| ||||||||||||||    
T  41504953 tcgaggaggagcatactcccaggtcccaagccaatac 41504989  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 42327392 - 42327448
Alignment:
Q  14 agagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||| || ||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  42327392 agagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 42327448  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 39715070 - 39715015
Alignment:
Q  15 gagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||| || ||| |||||||||||||||||| |||||||| ||||||| ||||||    
T  39715070 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaatac 39715015  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 3677349 - 3677406
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||| || | ||||||||||||||| |||||||||  |||||| ||||||||||    
T  3677349 gagagaatcgaacttaagacctcgaggagaagcatactcttagatcctaagccaatac 3677406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 6760947 - 6760910
Alignment:
Q  33 ctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  6760947 ctcgatgaggagcatactcccagatcccaaaccaatac 6760910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 42602622 - 42602577
Alignment:
Q  25 cctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||||| ||| ||||||| |||||||| ||||||||||||||    
T  42602622 cctaagaccttgagaaggagcacactcccaggtcccaagccaatac 42602577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 1729883 - 1729839
Alignment:
Q  26 ctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||| ||||||||||| |||||||  ||||||||||||||    
T  1729883 ctaagacctagaggaggagcacactcccaagtcccaagccaatac 1729839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 4262298 - 4262354
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaata 69  Q
    |||||||| || ||| |||||| ||||||||||| ||| |||| |||||||||||||    
T  4262298 gagagaatcgaacctgagaccttgaggaggagcacactgccaggtcccaagccaata 4262354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 27244387 - 27244339
Alignment:
Q  14 agagaattgagcctaagacctcgaggaggagcatactcccagatcccaa 62  Q
    ||||||| || ||| | ||||||||||||||||||||||||| ||||||    
T  27244387 agagaatcgaaccttaaacctcgaggaggagcatactcccaggtcccaa 27244339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 835 - 893
Alignment:
Q  12 agagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||| || ||| |||| ||||||||||||| | |||||||||||||||||||||    
T  835 agagagaatcgaacctgagacttcgaggaggagcacattcccagatcccaagccaatac 893  T

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Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 13042 - 13099
Alignment:
Q  13 gagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||| || ||| |||||| ||||||||||| ||||||||||| |||||||||||    
T  13042 gagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagccaatac 13099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 19859 - 19900
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  19859 agacctcaaggaggagcagactcccagatcccaagccaatac 19900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 157000 - 157040
Alignment:
Q  30 gacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  157000 gacctcgaggaggagcacactcccagatctcaagccaatac 157040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 35399 - 35442
Alignment:
Q  27 taagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||    
T  35399 taagaccttgaggaggagcatactcctagattccaagccaatac 35442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 94965 - 95024
Alignment:
Q  11 cagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||| |||||| ||| |||||| ||||||||||| |||||||| | ||||||||||||    
T  94965 cagagataattgaacctgagaccttgaggaggagcacactcccaggttccaagccaatac 95024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 15789 - 15830
Alignment:
Q  29 agacctcgaggaggagcatactcccagatcccaagccaatac 70  Q
    |||||| ||||||||||||||||| | |||||||||||||||    
T  15789 agaccttgaggaggagcatactccaaaatcccaagccaatac 15830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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