View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_high_33 (Length: 258)
Name: NF6487_high_33
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 41146588 - 41146835
Alignment:
| Q |
1 |
catgcttgtagcgtgtcagcttccttagcccagatgttcaatataatgagctaattactggcttacgaaaggaccaaacttactaagtcaagcttattga |
100 |
Q |
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| T |
41146588 |
catgcttgtagcgtgtcagcttccttagcccagatgttcaatataatgagctaattactggcttacgaaag-accaaacttactaagtcaagcttattga |
41146686 |
T |
|
| Q |
101 |
cactcgggaaacttccaggagtttcctatgtcccttccaaagataaggtttgaccgtaaggaagttttagctcagaccatactccaaccagcttttttcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41146687 |
cactcgggaaacttccaggagtttcctatgtcccttccaaagataaggtttgaccgttaggaagttttagctcagaccatactccaaccagcttttttcc |
41146786 |
T |
|
| Q |
201 |
ccatcgaacacctatctttcatcgtccttctcacattttctgcttcatc |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41146787 |
ccatcgaacacctatctttcatcgtccttctcacattttctgcttcatc |
41146835 |
T |
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