View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_high_34 (Length: 251)
Name: NF6487_high_34
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 4293436 - 4293675
Alignment:
| Q |
1 |
tagcaataggttctttgcagacaagcttttggtattttaaattcaatgtgtctttaaaaattgaactcttaacaaatgatatatctttatatgtttatgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4293436 |
tagcaataggttctttgcagacaagcttttggtattttaaattcaatgtgtctttaaaaattgaactcttaacaaatgatatatctttatatgttcatgg |
4293535 |
T |
|
| Q |
101 |
ttagttacctttctttttaaaacttttgatatgtttattctctttgttatgagtacaagagataacattaagagagtcctacacttatttaggaattaga |
200 |
Q |
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| T |
4293536 |
ttagttacctttctttttaaaacttttgatatgtttattctctttgttatgagtacaagagataacattaagagagtcctactcttatttaggaattaga |
4293635 |
T |
|
| Q |
201 |
gaattttcttggtggtacattacatcggcacttttttcat |
240 |
Q |
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| T |
4293636 |
gaattttcttggtggtacattacatcggtacttttttcat |
4293675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 12572058 - 12571819
Alignment:
| Q |
1 |
tagcaataggttctttgcagacaagcttttggtattttaaattcaatgtgtctttaaaaattgaactcttaacaaatgatatatctttatatgtttatgg |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12572058 |
tagcaataggttctttgtagacaagcttttggtattttaaattcaatgtgtctttaaaaattgaactcttaacaaatgatatatctttatatgttcatgg |
12571959 |
T |
|
| Q |
101 |
ttagttacctttctttttaaaacttttgatatgtttattctctttgttatgagtacaagagataacattaagagagtcctacacttatttaggaattaga |
200 |
Q |
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| T |
12571958 |
ttagttacctttctttttaaaacttttgatatgtttattctctttgttatgagtacaagagataacattaagagagtcctactcttgtttaggaattaga |
12571859 |
T |
|
| Q |
201 |
gaattttcttggtggtacattacatcggcacttttttcat |
240 |
Q |
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| T |
12571858 |
gaattttcttggtggtacattacatcggcactttattcat |
12571819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13548522 - 13548283
Alignment:
| Q |
1 |
tagcaataggttctttgcagacaagcttttggtattttaaattcaatgtgtctttaaaaattgaactcttaacaaatgatatatctttatatgtttatgg |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13548522 |
tagcaataggttctttgtagacaagcttttggtattttaaattcaatgtgtctttaaaaattgaactcttaacaaatgatatatctttatatgttcatgg |
13548423 |
T |
|
| Q |
101 |
ttagttacctttctttttaaaacttttgatatgtttattctctttgttatgagtacaagagataacattaagagagtcctacacttatttaggaattaga |
200 |
Q |
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| T |
13548422 |
ttagttacctttctttttaaaacttttgatatgtttattctctttgttatgagtacaagagataacattaagagagtcctactcttgtttaggaattaga |
13548323 |
T |
|
| Q |
201 |
gaattttcttggtggtacattacatcggcacttttttcat |
240 |
Q |
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| T |
13548322 |
gaattttcttggtggtacattacatcggcactttattcat |
13548283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 51389180 - 51389067
Alignment:
| Q |
7 |
taggttctttgcagacaagcttttggtattttaaa-ttcaatgtgtctttaaaaa-ttgaactcttaacaaatgatatatctttatatgtttatggttag |
104 |
Q |
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||||||||||||| ||||| ||||||||||||||| | | |||| |||||||||| ||||| |||||||||| ||||||||||| | ||||| |||| |
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| T |
51389180 |
taggttctttgcatacaagtttttggtattttaaactcccatgtatctttaaaaacttgaatccttaacaaataatatatctttagacatttataattag |
51389081 |
T |
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| Q |
105 |
tta-cctttctttt |
117 |
Q |
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||| |||||||||| |
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| T |
51389080 |
ttaccctttctttt |
51389067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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