View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_high_4 (Length: 587)
Name: NF6487_high_4
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 13 - 569
Target Start/End: Complemental strand, 25811543 - 25810987
Alignment:
| Q |
13 |
aatatcatgaacctgactgattctcttaatcttgaggggaatgttaaacatttgagcaatcttgtgatcctgcatagctgaagcaccatggaccaagctt |
112 |
Q |
| |
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|||||| |||||||| |||||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25811543 |
aatatcttgaacctgtctgattctcttaattttgaggggaatgttaaatagctgagctatcttgtgatcctgcatagctgaagcaccatggaccaagctt |
25811444 |
T |
|
| Q |
113 |
aatctaaaacagagcttcacttcagcaagcatagaattgaagatggaagacatagattgatgcttgtcatggaaatatctattatttctttcaatccaaa |
212 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25811443 |
aatctaaaactaagtttcacttcagcaagcatagaattaaagatggaagacatagattgatgcttgtcatggaaatatctattatttctttcaatccaaa |
25811344 |
T |
|
| Q |
213 |
tagcccatattaagtgtatgatagaagagttcagaacttgttgcacaagtttgcttcctataccaatcctgcctaaaagaagagaataacaagaagtgaa |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25811343 |
tagcccatattaagtgtatgatagaagagttcagaacttgctgcacaagtttgctacccataccaatcctgcctaaaagaagagaagaacaagaagtgaa |
25811244 |
T |
|
| Q |
313 |
atccaatctttgatcagtccctttgctaagccaatcccaaagcttaaaagtaacaggacattcaaaaaacacatgatgagtagattcaatgtgtttcatg |
412 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25811243 |
atccaagctttgatcagtccctttgctaagccaatcccaaagcttaaaagtaacagggcattcaaaaagcacatgatgagtagattcaatgtgtttcatg |
25811144 |
T |
|
| Q |
413 |
cagaagcagcaaatggaaacgatataacatcctcttttcctgaggttatcatcagttggaagcttgttgtgaatcaccctccatatgataaaggctctag |
512 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |
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| T |
25811143 |
cagaagcagcaaatagaaacgatataacatcctcttttcctgaggttatcatcagttggaagcttgttgtgaagcatcctccatgtgataaaggctctag |
25811044 |
T |
|
| Q |
513 |
agggaggtatataagaattccacaaaagtttattccagggcaccttctggctatagc |
569 |
Q |
| |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25811043 |
agggaggaatataagaattccacaaaagtttagtccagggcaccttctggctatagc |
25810987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Complemental strand, 12403604 - 12403164
Alignment:
| Q |
13 |
aatatcatgaacctgactgattctcttaatcttgaggggaatgttaaacatttgagcaatcttgtgatcctgcatagctgaagcaccatggaccaagctt |
112 |
Q |
| |
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|||||| |||||||| |||||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12403604 |
aatatcttgaacctgtctgattctcttaattttgaggggaatgttaaatagctgagctatcttgtgatcctgcatagctgaagcaccatggaccaagctt |
12403505 |
T |
|
| Q |
113 |
aatctaaaacagagcttcacttcagcaagcatagaattgaagatggaagacatagattgatgcttgtcatggaaatatctattatttctttcaatccaaa |
212 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12403504 |
aatctaaaactaagtttcacttcagcaagcatagaattaaagatggaagacatagattgatgcttgtcatggaaatatctattatttctttcaatccaaa |
12403405 |
T |
|
| Q |
213 |
tagcccatattaagtgtatgatagaagagttcagaacttgttgcacaagtttgcttcctataccaatcctgcctaaaagaagagaataacaagaagtgaa |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12403404 |
tagcccatattaagtgtatgatagaagagttcagaacttgctgcacaagtttgctacccataccaatcctgcctaaaagaagagaagaacaagaagtgaa |
12403305 |
T |
|
| Q |
313 |
atccaatctttgatcagtccctttgctaagccaatcccaaagcttaaaagtaacaggacattcaaaaaacacatgatgagtagattcaatgtgtttcatg |
412 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12403304 |
atccaagctttgatcagtccctttgctaagccaatcccaaagcttaaaagtaacagggcattcaaaaaacacatgatgagtagattcaatgtgttccatg |
12403205 |
T |
|
| Q |
413 |
cagaagcagcaaatggaaacgatataacatcctcttttcct |
453 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
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| T |
12403204 |
cagaagcagcaaatagaaacgatataacatcctcttttcct |
12403164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 526
Target Start/End: Complemental strand, 12403166 - 12403130
Alignment:
| Q |
490 |
cctccatatgataaaggctctagagggaggtatataa |
526 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||| |
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| T |
12403166 |
cctccatgtgataaaggctctagagggaggaatataa |
12403130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 409 - 534
Target Start/End: Complemental strand, 17635026 - 17634901
Alignment:
| Q |
409 |
catgcagaagcagcaaatggaaacgatataacatcctcttttcctgaggttatcatcagttggaagcttgttgtgaatcaccctccatatgataaaggct |
508 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| |||||||| || | ||| |||||||| |||| |||||||| || | ||||| |||| || | | |
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| T |
17635026 |
catgcaaaagcagcaaatagaaactatataacaacctctttttcttaagttctcatcagtaggaattttgttgtggatgagtctccaagtgatgaatgat |
17634927 |
T |
|
| Q |
509 |
ctagagggaggtatataagaattcca |
534 |
Q |
| |
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||||| |||||||||||||| ||||| |
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| T |
17634926 |
ctagaaggaggtatataagagttcca |
17634901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 534
Target Start/End: Complemental strand, 17136261 - 17136200
Alignment:
| Q |
473 |
agcttgttgtgaatcaccctccatatgataaaggctctagagggaggtatataagaattcca |
534 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| |||||| || || |||||||| ||||| |
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|
| T |
17136261 |
agcttgttgtgaagcagcctccatgtgataaaggatctagatgggggaatataagagttcca |
17136200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 534
Target Start/End: Original strand, 6937396 - 6937457
Alignment:
| Q |
473 |
agcttgttgtgaatcaccctccatatgataaaggctctagagggaggtatataagaattcca |
534 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| |||||| || || |||||||| ||||| |
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|
| T |
6937396 |
agcttgttgtgaagcagcctccatgtgataaaggatctagatgggggaatataagagttcca |
6937457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 28734887 - 28734975
Alignment:
| Q |
182 |
tggaaatatctattatttctttcaatccaaatagcccatattaagtgtatgatagaagagttcagaacttgttgcacaagtttgcttcc |
270 |
Q |
| |
|
||||||||||| | || ||||||||||||||| || | |||| |||||| || | |||||||| ||| || ||||| ||||||||||| |
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| T |
28734887 |
tggaaatatctctggttcctttcaatccaaataacctaaattaggtgtattatggcagagttcataacctgctgcaccagtttgcttcc |
28734975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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