View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_high_7 (Length: 517)
Name: NF6487_high_7
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_high_7 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 9 - 517
Target Start/End: Original strand, 37070731 - 37071239
Alignment:
| Q |
9 |
gaagaatattacgcttaaatgaagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaagtggcctccatgagatgc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37070731 |
gaagaatattacgcttaaatgaagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaagtggcctccatgagatgc |
37070830 |
T |
|
| Q |
109 |
tagatgaattgagaaatagccatatttgtccctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacctatagatgct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37070831 |
tagatgaattgagaaatagccatatttgtccctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacctatagatgct |
37070930 |
T |
|
| Q |
209 |
gcataatgaagtggaagcctttcatatgtgtccgttgaatgtatccaagttggcttcttttgcagtatgacccttagcatttctaatcacacatgtataa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37070931 |
gcataatgaagtggaagcctttcatatgtgtccgttgaatgtatccaagttggcttcttttgcagtatgacccttagcatttctaatcacacatgtataa |
37071030 |
T |
|
| Q |
309 |
ttgtgagttagatcaaatataaaaatgtaannnnnnnnnnatacaaatataatgtttattctaggataagatgccctgataatttggattcgacataaag |
408 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37071031 |
ttgtgagttagatcaaatataaaaatgtaattttttttttatacaaatataatgtttattctaggataagatgccctgataatttggattcgacataaag |
37071130 |
T |
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| Q |
409 |
gtaagtgaaatctaacaaagaannnnnnnnaactatgatttaaactcggattcctcgaacatattgttattaaccaaaactatttatactaactagaact |
508 |
Q |
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| T |
37071131 |
gtaagtgaaatctaacaaagaattttttttaactatgatttaaactcggattcctcgaacatattgttattaaccaaaactatttatactaactagaact |
37071230 |
T |
|
| Q |
509 |
agttattta |
517 |
Q |
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||||||||| |
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| T |
37071231 |
agttattta |
37071239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 37080564 - 37080892
Alignment:
| Q |
9 |
gaagaatattacgcttaaatgaagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaagtggcctccatgagatgc |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| || ||||| |||| ||||| |
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| T |
37080564 |
gaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaacttctctactacttccacatggccaccatatgatgc |
37080663 |
T |
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| Q |
109 |
tagatgaattgagaaatagccatatttgtccctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacctatagatgct |
208 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||| ||| ||||||||||||||||||| |
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| T |
37080664 |
tagatgaattgggaaatagccatatttgtccctttgattggtgcaacatttacatttgccagttaaataaacaacacctacaaggtaacctatagatgct |
37080763 |
T |
|
| Q |
209 |
gcataatgaagtggaagcctttcatatgtgtccgttgaatgtatccaagttggcttcttttgcagtatgacccttagcatttctaatcacacatgtataa |
308 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||| |||||| || | ||||||||| || |||||||||||| |
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| T |
37080764 |
gcataatgaagtggaagccttttatatgtgtctgttaaatgtatccaagttggcttctgttgtagtatgtccttcagcatttctgattacacatgtataa |
37080863 |
T |
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| Q |
309 |
ttgtgagttagatcaaatataaaaatgta |
337 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
37080864 |
ttgtgagttagatcaaatataaaaatgta |
37080892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 36953709 - 36953449
Alignment:
| Q |
9 |
gaagaatattacgcttaaatgaagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaagtggcctccatgagatgc |
108 |
Q |
| |
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||||||||||||||| | ||||||||||||||||| |||||||| ||||| ||||| ||||||||||| || |||| || ||||| |||| ||||| |
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| T |
36953709 |
gaagaatattacgctcatgagaagtgtcaagcatctctgtgggatcaggacaatattccaacaacttcttcactacttccacatggccaccatacgatgc |
36953610 |
T |
|
| Q |
109 |
tagatgaattgagaaatagccatatttgtccctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacctatagatgct |
208 |
Q |
| |
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||||||||||| |||||| |||||||||||||||||| |||||||||||||||| || ||| |||| ||||||||| |||||||||||||| | | |
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| T |
36953609 |
tagatgaattgggaaataaccatatttgtccctttgaatggtgcaacatttacacatttcaattaattgaacaacgccttcaaggtaacctatagtcgat |
36953510 |
T |
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| Q |
209 |
gcataatgaagtggaagcctttcatatgtgtccgttgaatgtatccaagttggcttctttt |
269 |
Q |
| |
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|| |||||||| |||||| |||||| | ||||| ||||||| ||| |||||||||| |||| |
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| T |
36953509 |
gcgtaatgaagaggaagcatttcatgtttgtccattgaatggatctaagttggcttgtttt |
36953449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 30 - 292
Target Start/End: Complemental strand, 36947254 - 36946992
Alignment:
| Q |
30 |
aagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaagtggcctccatgagatgctagatgaattgagaaatagcc |
129 |
Q |
| |
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||||||| |||||||| ||||||| ||||| ||||| ||||||||||| || |||| || ||||| |||| ||||||||||||||||| |||||| || |
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| T |
36947254 |
aagtgtcgagcatctctctgggatcaggacaatattccaacaacttcttcactacttccacatggccaccataagatgctagatgaattgggaaataacc |
36947155 |
T |
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| Q |
130 |
atatttgtccctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacctatagatgctgcataatgaagtggaagcctt |
229 |
Q |
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|| |||||||||||| | ||||| ||||| ||| ||||||||||||| | ||| |||| ||||||||||||||||||||| |||||||| ||||||||| |
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| T |
36947154 |
attattgtccctttgaattgtgcagcatttgcatgtgccaagtaataaataaacaccttcaaggtaacctatagatgctgcgtaatgaagaggaagcctt |
36947055 |
T |
|
| Q |
230 |
tcatatgtgtccgttgaatgtatccaagttggcttcttttgcagtatgacccttagcatttct |
292 |
Q |
| |
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||| | ||||| || |||| |||||| ||||||| |||| ||||||| ||||| |||||| |
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| T |
36947054 |
ccatctttgtcccttaaatggatccaaattggcttgttttctagtatgatgcttagtatttct |
36946992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 103 - 259
Target Start/End: Complemental strand, 36964745 - 36964586
Alignment:
| Q |
103 |
agatgctagatgaattgagaaatagccatatttgtcc---ctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacct |
199 |
Q |
| |
|
|||||||| |||||||| ||| |||||||| |||| |||||| | ||||| ||||| ||||||||||||||||||||||| |||| |||||||||| |
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| T |
36964745 |
agatgctaaatgaattggaaaagagccatatatgtcatcactttgaattgtgcagcatttgcatatgccaagtaataattcaacaccttcaaggtaacct |
36964646 |
T |
|
| Q |
200 |
atagatgctgcataatgaagtggaagcctttcatatgtgtccgttgaatgtatccaagtt |
259 |
Q |
| |
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|||||| |||| |||||||| ||||| ||| ||| | ||||| || |||| ||||||||| |
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| T |
36964645 |
atagatactgcgtaatgaagaggaagtcttccatgtttgtcccttaaatggatccaagtt |
36964586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 12494537 - 12494789
Alignment:
| Q |
9 |
gaagaatattacgcttaaatgaagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaagtggcctccatgagatgc |
108 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| |||||||| ||||| |||||||||||||| || || |||| || ||||| |||| ||||| |
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| T |
12494537 |
gaagaatattacgtttatgagaagtgtcaagcatctctgtgggatcaggacaatattctaacaactttttcactacttccacatggccaccatatgatgc |
12494636 |
T |
|
| Q |
109 |
tagatgaattgagaaatagccatatttgtccctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacctatagatgct |
208 |
Q |
| |
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|| |||||||| |||||| | |||||||||||||| | ||||| ||||| ||| || ||| |||||||||||| |||| ||||||||||||||||||| |
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| T |
12494637 |
tacatgaattgggaaataacataatttgtccctttgaattgtgcagcatttgcatttgtcaattaataattcaacaccttcaaggtaacctatagatgct |
12494736 |
T |
|
| Q |
209 |
gcataatgaagtggaagcctttcatatgtgtccgttgaatgtatccaagttgg |
261 |
Q |
| |
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|| |||||||||||||||||||||| | ||||| ||||||| | ||||||||| |
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| T |
12494737 |
gcgtaatgaagtggaagcctttcatgtttgtcccttgaatggacccaagttgg |
12494789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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