View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6487_low_10 (Length: 446)

Name: NF6487_low_10
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6487_low_10
NF6487_low_10
[»] chr3 (19 HSPs)
chr3 (16-428)||(7973206-7973618)
chr3 (22-78)||(28928899-28928955)
chr3 (13-75)||(2597231-2597293)
chr3 (13-71)||(14339617-14339675)
chr3 (13-75)||(27093372-27093434)
chr3 (13-82)||(30311302-30311371)
chr3 (16-75)||(46518631-46518690)
chr3 (22-84)||(36720375-36720437)
chr3 (22-75)||(4222144-4222197)
chr3 (22-75)||(31788990-31789043)
chr3 (14-66)||(7975430-7975482)
chr3 (13-75)||(10499120-10499182)
chr3 (13-75)||(14186651-14186712)
chr3 (13-75)||(37788476-37788538)
chr3 (14-75)||(5499419-5499480)
chr3 (25-78)||(30510222-30510275)
chr3 (22-75)||(31520625-31520678)
chr3 (13-66)||(32651449-32651502)
chr3 (13-49)||(47279415-47279451)
[»] chr7 (23 HSPs)
chr7 (13-75)||(15137556-15137618)
chr7 (13-73)||(41519275-41519335)
chr7 (13-78)||(41519121-41519186)
chr7 (13-75)||(18363699-18363761)
chr7 (13-75)||(26459421-26459483)
chr7 (16-78)||(45976937-45976999)
chr7 (13-75)||(22927479-22927541)
chr7 (13-75)||(23301613-23301675)
chr7 (13-75)||(24513800-24513862)
chr7 (13-75)||(25021346-25021408)
chr7 (13-75)||(43215187-43215249)
chr7 (13-75)||(48771941-48772003)
chr7 (13-80)||(17041023-17041090)
chr7 (13-75)||(20335842-20335904)
chr7 (13-75)||(23552121-23552183)
chr7 (13-51)||(37233583-37233621)
chr7 (13-75)||(39499730-39499792)
chr7 (13-75)||(39631847-39631909)
chr7 (17-75)||(42836016-42836074)
chr7 (13-71)||(43590914-43590972)
chr7 (13-66)||(21877820-21877873)
chr7 (19-51)||(5716649-5716681)
chr7 (20-76)||(15905691-15905747)
[»] chr2 (16 HSPs)
chr2 (13-75)||(1435067-1435129)
chr2 (13-75)||(42327406-42327468)
chr2 (22-83)||(1729811-1729872)
chr2 (14-75)||(16918590-16918651)
chr2 (13-80)||(29503269-29503336)
chr2 (14-80)||(42602552-42602618)
chr2 (21-74)||(3001383-3001436)
chr2 (13-81)||(34041599-34041667)
chr2 (13-75)||(11062363-11062425)
chr2 (13-75)||(11251090-11251152)
chr2 (13-75)||(37480078-37480140)
chr2 (13-75)||(40416401-40416463)
chr2 (22-75)||(7799055-7799108)
chr2 (13-66)||(12994387-12994440)
chr2 (22-75)||(42922417-42922470)
chr2 (13-61)||(13803512-13803560)
[»] chr4 (14 HSPs)
chr4 (14-83)||(19680800-19680869)
chr4 (13-75)||(4249180-4249242)
chr4 (13-75)||(8030215-8030277)
chr4 (13-75)||(37109362-37109424)
chr4 (13-75)||(19238588-19238650)
chr4 (13-75)||(31759669-31759731)
chr4 (13-75)||(31826612-31826674)
chr4 (13-63)||(38869783-38869833)
chr4 (13-76)||(49576905-49576968)
chr4 (13-75)||(7949465-7949527)
chr4 (29-75)||(27965537-27965583)
chr4 (21-71)||(29312271-29312321)
chr4 (13-75)||(51250533-51250595)
chr4 (22-75)||(28635699-28635752)
[»] chr1 (21 HSPs)
chr1 (14-75)||(31794276-31794337)
chr1 (13-75)||(19528338-19528400)
chr1 (13-75)||(33700784-33700846)
chr1 (13-75)||(41508834-41508896)
chr1 (13-66)||(52336785-52336838)
chr1 (16-66)||(8177196-8177246)
chr1 (13-75)||(9165206-9165268)
chr1 (13-75)||(15786331-15786393)
chr1 (14-79)||(26232398-26232463)
chr1 (14-75)||(36371473-36371534)
chr1 (13-80)||(8904412-8904479)
chr1 (13-75)||(2799865-2799927)
chr1 (13-71)||(6122801-6122859)
chr1 (14-75)||(18459243-18459305)
chr1 (13-75)||(25494080-25494142)
chr1 (13-71)||(52116792-52116850)
chr1 (22-83)||(21268013-21268074)
chr1 (15-76)||(24730386-24730447)
chr1 (22-75)||(30420313-30420366)
chr1 (19-84)||(35187913-35187978)
chr1 (16-60)||(44046162-44046206)
[»] chr5 (13 HSPs)
chr5 (13-85)||(16436611-16436682)
chr5 (13-75)||(21549148-21549210)
chr5 (13-75)||(25627060-25627122)
chr5 (24-75)||(26598527-26598578)
chr5 (13-80)||(30883209-30883276)
chr5 (22-75)||(29075784-29075837)
chr5 (13-80)||(87434-87501)
chr5 (13-75)||(16457813-16457875)
chr5 (13-75)||(17028275-17028337)
chr5 (16-70)||(37258380-37258434)
chr5 (14-75)||(34984809-34984870)
chr5 (23-75)||(22737085-22737137)
chr5 (22-66)||(35796639-35796683)
[»] chr8 (20 HSPs)
chr8 (13-75)||(2203495-2203557)
chr8 (13-75)||(44780125-44780187)
chr8 (13-82)||(16852336-16852405)
chr8 (13-80)||(19703498-19703565)
chr8 (13-75)||(3624583-3624645)
chr8 (13-75)||(6436566-6436628)
chr8 (22-75)||(30483904-30483957)
chr8 (13-60)||(6536538-6536585)
chr8 (16-75)||(6569785-6569844)
chr8 (16-75)||(12988431-12988490)
chr8 (13-71)||(11819783-11819841)
chr8 (13-75)||(18540301-18540363)
chr8 (13-75)||(23361660-23361722)
chr8 (13-75)||(26688868-26688930)
chr8 (21-75)||(29431014-29431068)
chr8 (13-75)||(29858060-29858122)
chr8 (16-66)||(35025207-35025257)
chr8 (13-79)||(35690075-35690141)
chr8 (23-80)||(3826798-3826855)
chr8 (23-75)||(20994479-20994531)
[»] chr6 (6 HSPs)
chr6 (16-75)||(12188317-12188376)
chr6 (13-83)||(10338185-10338255)
chr6 (22-78)||(34293836-34293892)
chr6 (16-74)||(27989671-27989729)
chr6 (22-71)||(21418477-21418526)
chr6 (22-74)||(6776627-6776679)
[»] scaffold0002 (1 HSPs)
scaffold0002 (13-75)||(94982-95044)
[»] scaffold0172 (1 HSPs)
scaffold0172 (13-66)||(15788-15841)
[»] scaffold0211 (1 HSPs)
scaffold0211 (24-75)||(24056-24107)
[»] scaffold0300 (1 HSPs)
scaffold0300 (16-62)||(4356-4402)
[»] scaffold0122 (1 HSPs)
scaffold0122 (13-71)||(6930-6988)
[»] scaffold0299 (1 HSPs)
scaffold0299 (13-65)||(11541-11593)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Complemental strand, 7973618 - 7973206
Alignment:
Q  16 accttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatttaaaatgtgaatagcttaaaaaacaaaaccacagaat 115  Q
    |||||||| |||| |||||| |||||||||||||  ||| |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  7973618 accttaagaaggaacacacttctaaatcccaagcgggtatcactagaccaactcaagtggatttaaaatgtgaatagcttaaaaaacaaaaccacagaat 7973519  T
Q  116 ttgtgatagttggagagaattagttggggacttagttgggaccacaagaaaatgaaagttttgatcatattgaacatgctgccatttcaaaaggacagtt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7973518 ttgtgatagttggagagaattagttggggacttagttgggaccacaagaaaatgaaagttttgatcatattgaacatgctgccatctcaaaaggacagtt 7973419  T
Q  216 tgaaaacctattttgctgcaacccctgagtctccctaatttaatttgatcttggatcttgtgctatattattgtgtacagagaattcagagtactgcttt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7973418 tgaaaacctattttgctgcaacccctgagtctccctaatttaatttgatcttggatcttgtgctatattattgtgtacagagaattcagagtactgcttt 7973319  T
Q  316 caaattcagtcctcttcttgtgaatttatgtcttctcattttcattgtcagaataaccgtaagattttggtaacatttcttcactttttcacctattttt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7973318 caaattcagtcctcttcttgtgaatttatgtcttctcattttcattgtcagaataaccgtaagattttggtaacatttcttcactttttcaccttttttt 7973219  T
Q  416 tggatagatgctt 428  Q
    |||||||||||||    
T  7973218 tggatagatgctt 7973206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 28928899 - 28928955
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatt 78  Q
    |||||||||||||||  | ||||||||||| ||||||||||||||||||||||||||    
T  28928899 aggaggagcacactctcagatcccaagccaataccactaggccaatccaagtggatt 28928955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 2597231 - 2597293
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||| |||||||||||||||||||||||| |||||| |||||| || |||| ||||||||    
T  2597231 gagacctcaaggaggagcacactcctaaatccgaagccaataccaccagaccaacccaagtgg 2597293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 14339675 - 14339617
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaa 71  Q
    ||||| || |||||||||||||||| ||||||||||||| |||||| ||||||||||||    
T  14339675 gagacattgaggaggagcacactcccaaatcccaagccaataccaccaggccaatccaa 14339617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 27093372 - 27093434
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| || | |||||||| |||||||||||||| ||||||||    
T  27093372 gagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgg 27093434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 30311371 - 30311302
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatttaaa 82  Q
    |||||||| |||||||||||||||| | ||||||||||  |||||||||||||| ||| |||| ||||||    
T  30311371 gagaccttgaggaggagcacactcccagatcccaagcctataccactaggccaacccaggtgggtttaaa 30311302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 46518690 - 46518631
Alignment:
Q  16 accttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||| |||||||||||||||| | ||||||||||| |||||||| ||||| ||||||||    
T  46518690 accttgaggaggagcacactcccagatcccaagccaataccactatgccaacccaagtgg 46518631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 36720437 - 36720375
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatttaaaat 84  Q
    |||||||||||||||| | ||||||||||| |||||| || |||| |||||||| ||||||||    
T  36720437 aggaggagcacactcccatatcccaagccaataccaccagaccaacccaagtgggtttaaaat 36720375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 4222197 - 4222144
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||||||||||| | ||||||||||| |||||||| ||||| ||||||||    
T  4222197 aggaggagcacactcccagatcccaagccaataccactaagccaacccaagtgg 4222144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 31788990 - 31789043
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||||||||||| | ||||||||||| || ||||||||||| ||||||||    
T  31788990 aggaggagcacactcccagatcccaagccaataacactaggccaacccaagtgg 31789043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 7975482 - 7975430
Alignment:
Q  14 agaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaa 66  Q
    ||||||| |||||||||||||||| | ||||||||||  ||||||||||||||    
T  7975482 agaccttgaggaggagcacactcccagatcccaagcctataccactaggccaa 7975430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 10499120 - 10499182
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||| ||||| ||||| ||||| | ||||||||||| |||||| ||||||| ||||||||    
T  10499120 gagacctcaaggaagagcagactcccagatcccaagccaataccaccaggccaacccaagtgg 10499182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 14186712 - 14186651
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| |  ||||||| || |||||||||||||| ||||||||    
T  14186712 gagaccttgaggaggagcacactcc-aggtcccaagacaataccactaggccaacccaagtgg 14186651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 37788476 - 37788538
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| ||||||||||||||||||  | ||||| || ||||||| |||||| ||||||||    
T  37788476 gagaccttgaggaggagcacactcctaggttccaagtcaataccactgggccaacccaagtgg 37788538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 5499419 - 5499480
Alignment:
Q  14 agaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||||||||||||||||||  | ||| |||| || |||||| ||||||| ||||||||    
T  5499419 agaccttaaggaggagcacactctcagatctcaagtcaataccaccaggccaacccaagtgg 5499480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 30510222 - 30510275
Alignment:
Q  25 aggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatt 78  Q
    ||||||| |||||||  ||||||||||||||||| ||| ||| |||||||||||    
T  30510222 aggagcatactcctaggtcccaagccagtaccaccaggacaacccaagtggatt 30510275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 31520625 - 31520678
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||||||||||| | ||||||||||| | |||| ||||||| ||||||||    
T  31520625 aggaggagcacactcccagatcccaagccaatgccaccaggccaacccaagtgg 31520678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 32651449 - 32651502
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaa 66  Q
    |||| ||| |||||||||||||||| |  |||||||||| ||||||||||||||    
T  32651449 gagatcttgaggaggagcacactcccaggtcccaagccaataccactaggccaa 32651502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 47279415 - 47279451
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagc 49  Q
    ||||||||||||||||||||||||| | |||||||||    
T  47279415 gagaccttaaggaggagcacactcccagatcccaagc 47279451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 15137618 - 15137556
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  15137618 gagaccttgaggaggagcacactcctaaatcccaagtcagtaccaccaggccaacccaagtgg 15137556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 41519275 - 41519335
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagt 73  Q
    |||||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||||    
T  41519275 gagaccttgaggaggagcacactcctaaatcccaagtcaataccactaggccaacccaagt 41519335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 41519121 - 41519186
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatt 78  Q
    |||||||| || |||||||||||| ||||||||||||||||| ||||||||||| | |||||||||    
T  41519121 gagaccttgagaaggagcacactcttaaatcccaagccagtatcactaggccaaccaaagtggatt 41519186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 18363761 - 18363699
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| ||||| ||||||  |||||||||||||| ||||||||    
T  18363761 gagaccttgaggaggagcacactcccaaatctcaagcctataccactaggccaacccaagtgg 18363699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 26459421 - 26459483
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| |  |||||||||| |||||||||||||| ||||||||    
T  26459421 gagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 26459483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 45976937 - 45976999
Alignment:
Q  16 accttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatt 78  Q
    |||||||||||||||||||||| |  || ||||||| |||||||||||||| |||||||||||    
T  45976937 accttaaggaggagcacactcccaggtcacaagccaataccactaggccaacccaagtggatt 45976999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 22927541 - 22927479
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| ||||| |||||||||||| ||||||||  | |||||||||||||| ||||||||    
T  22927541 gagacctttaggagaagcacactcctagatcccaagttaataccactaggccaacccaagtgg 22927479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 23301613 - 23301675
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||| ||||||||||||||||| || ||||||| || |||||| ||||||| ||||||||    
T  23301613 gagacctcaaggaggagcacactcccaagtcccaagtcaataccaccaggccaacccaagtgg 23301675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 24513862 - 24513800
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||| |||||| || ||||||| ||||| ||||||| |||||||||||||| ||||||||    
T  24513862 gagacctcaaggagaagtacactcccaaatctcaagccaataccactaggccaacccaagtgg 24513800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 25021346 - 25021408
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||| || |||||||||||||||| |  |||||||||| |||||||||||||| ||||||||    
T  25021346 gagactttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 25021408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 43215249 - 43215187
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| |  |||||||||| ||||||||| |||| ||||||||    
T  43215249 gagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaagtgg 43215187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 48772003 - 48771941
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||| ||||||||||||||||| | ||||||||||| |||||| | ||||| ||||||||    
T  48772003 gagacctcaaggaggagcacactcccagatcccaagccaataccaccaagccaacccaagtgg 48771941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 17041023 - 17041090
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggattta 80  Q
    |||||||| |||||||||||||| | | ||||||||||| | ||||||| |||| |||||||| ||||    
T  17041023 gagaccttgaggaggagcacacttccagatcccaagccaatgccactagaccaacccaagtgggttta 17041090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 20335842 - 20335904
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||  |||||||||||||||| || |||||||||| |||| |||| |||| ||||||||    
T  20335842 gagacctcgaggaggagcacactcccaagtcccaagccaatacctctagaccaacccaagtgg 20335904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 23552183 - 23552121
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| |  ||||||| || || ||||||||||| ||||||||    
T  23552183 gagaccttgaggaggagcacactcccaggtcccaagtcaatagcactaggccaacccaagtgg 23552121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 37233583 - 37233621
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagcca 51  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  37233583 gagaccttaaggaggagcacactcccacatcccaagcca 37233621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 39499730 - 39499792
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||||| ||||| |||||||  |  |||||||||| |||||||||||||| ||||||||    
T  39499730 gagaccttaaagaggaacacactcacaggtcccaagccaataccactaggccaacccaagtgg 39499792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 39631909 - 39631847
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||  ||||| |  |||||||||| |||||||||||||| ||||||||    
T  39631909 gagaccttgaggaggagcttactcccaggtcccaagccaataccactaggccaacccaagtgg 39631847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 42836016 - 42836074
Alignment:
Q  17 ccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||| |||| ||||||||||| |  |||||||||| |||||||||||||| ||||||||    
T  42836016 ccttgaggaagagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 42836074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 43590972 - 43590914
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaa 71  Q
    ||||| || |||||||||||||||| || |||||||||| |||||| ||||||| ||||    
T  43590972 gagacattgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaa 43590914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 21877873 - 21877820
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaa 66  Q
    |||||||||||||||||||| |||| |  ||||||| || ||||||||||||||    
T  21877873 gagaccttaaggaggagcaccctcccaggtcccaagtcaataccactaggccaa 21877820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 5716649 - 5716681
Alignment:
Q  19 ttaaggaggagcacactcctaaatcccaagcca 51  Q
    ||||| |||||||||||||||||||||||||||    
T  5716649 ttaagaaggagcacactcctaaatcccaagcca 5716681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 15905691 - 15905747
Alignment:
Q  20 taaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgga 76  Q
    |||||||||||||||||| |  |||||||||| |||| | ||||||| |||||||||    
T  15905691 taaggaggagcacactcccaggtcccaagccaataccgccaggccaacccaagtgga 15905747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 1435129 - 1435067
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  1435129 gagaccttgaggagaagcacactcctaaatcccaagccagtaccactatgccaacccaagtgg 1435067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 42327406 - 42327468
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| |  |||||||||| |||||||||||||| ||||||||    
T  42327406 gagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 42327468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 1729872 - 1729811
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatttaaaa 83  Q
    |||||||||||||||| || |||||||||| ||||||||| |||| |||||||| |||||||    
T  1729872 aggaggagcacactcccaagtcccaagccaataccactagcccaacccaagtgggtttaaaa 1729811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 16918590 - 16918651
Alignment:
Q  14 agaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||| |||||||||||||||| | ||||||| ||| |||||||||||||| ||||||||    
T  16918590 agaccttgaggaggagcacactcccagatcccaaaccaataccactaggccaacccaagtgg 16918651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 29503336 - 29503269
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggattta 80  Q
    |||||||| |||||||||||||||| |  |||||| ||| |||||||||||||| |||||||| ||||    
T  29503336 gagaccttgaggaggagcacactcccaggtcccaaaccaataccactaggccaacccaagtgggttta 29503269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 42602618 - 42602552
Alignment:
Q  14 agaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggattta 80  Q
    ||||||| || ||||||||||||| |  |||||||||| |||||||||||||| |||||||| ||||    
T  42602618 agaccttgagaaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttta 42602552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 3001436 - 3001383
Alignment:
Q  21 aaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtg 74  Q
    ||||||||||||||||||| ||| |||| || |||||||||||||| |||||||    
T  3001436 aaggaggagcacactcctagatctcaagtcaataccactaggccaacccaagtg 3001383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 34041599 - 34041667
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatttaa 81  Q
    |||||||| |||||||||||||||  | |||| ||| || |||||||||||||| |||||||| |||||    
T  34041599 gagaccttgaggaggagcacactctcagatcctaagtcaataccactaggccaacccaagtgggtttaa 34041667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 11062425 - 11062363
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| ||||| |||||||||| || | |||||||| || ||||||||||| ||||||||    
T  11062425 gagaccttgaggagaagcacactcccaagttccaagccaatatcactaggccaacccaagtgg 11062363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 11251152 - 11251090
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||| | || |||||||||| |||||||| ||||| | ||||||    
T  11251152 gagaccttgaggaggagcacacttccaagtcccaagccaataccactaagccaacctaagtgg 11251090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 37480140 - 37480078
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||  |  |||||||||| |||||| ||||||| ||||||||    
T  37480140 gagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaacccaagtgg 37480078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 40416401 - 40416463
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||||||||||||||| ||||| |  | ||||| || |||||||||||||| ||||||||    
T  40416401 gagaccttaaggaggagcatactcccaggttccaagtcaataccactaggccaacccaagtgg 40416463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 7799055 - 7799108
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||||||||||| || |||||||||| |||||| ||| ||| ||||||||    
T  7799055 aggaggagcacactcccaagtcccaagccaataccaccaggacaacccaagtgg 7799108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 12994387 - 12994440
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaa 66  Q
    ||||||||||||||||||||||||| |  ||||||| || ||||||||| ||||    
T  12994387 gagaccttaaggaggagcacactcccaggtcccaagtcaataccactagaccaa 12994440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 42922470 - 42922417
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||||||||||| |  | |||||||| |||||||||||||| ||||||||    
T  42922470 aggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgg 42922417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 13803560 - 13803512
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactag 61  Q
    |||||||| ||||||||||||||||||| || ||||||| || ||||||    
T  13803560 gagaccttgaggaggagcacactcctaagtctcaagccaatatcactag 13803512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 19680800 - 19680869
Alignment:
Q  14 agaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatttaaaa 83  Q
    ||||||| |||| ||||||||||| || |||||||| | ||||||||||||||||||||||| |||||||    
T  19680800 agaccttgaggaagagcacactcccaagtcccaagcgaataccactaggccaatccaagtgggtttaaaa 19680869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 4249242 - 4249180
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| ||||||||||||  |||||||||||||| | ||||||    
T  4249242 gagaccttgaggaggagcacactccaaaatcccaagcctataccactaggccaagcgaagtgg 4249180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 8030215 - 8030277
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| || |||||||||  |||||||||| ||||||||||||    
T  8030215 gagaccttgaggaggagcacactcccaagtcccaagcctataccactagggcaatccaagtgg 8030277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 37109362 - 37109424
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| |  |||||||||| |||||||||||||| ||||||||    
T  37109362 gagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 37109424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 19238588 - 19238650
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||  |||||||||||||||| || |||||||||| |||||| ||||||| ||||||||    
T  19238588 gagacctcgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaagtgg 19238650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 31759669 - 31759731
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| || |||||||||| |||||||||  ||| ||||||||    
T  31759669 gagaccttgaggaggagcacactcccaagtcccaagccaataccactagatcaacccaagtgg 31759731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 31826674 - 31826612
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||  ||||||||||||  |||||||||| ||| ||||||||    
T  31826674 gagaccttgaggaggagcacactcgcaaatcccaagcctataccactagggcaacccaagtgg 31826612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 38869833 - 38869783
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggc 63  Q
    |||||||| |||||||||||||||| | ||||||||||| |||||||||||    
T  38869833 gagaccttgaggaggagcacactcccagatcccaagccaataccactaggc 38869783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 49576905 - 49576968
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgga 76  Q
    |||||||| |||||||||||||||| || ||| |||||| |||||| ||||||| |||| ||||    
T  49576905 gagaccttgaggaggagcacactcccaagtccaaagccaataccaccaggccaacccaattgga 49576968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 7949465 - 7949527
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| |  |||||||||| |||| ||||||||  ||||||||    
T  7949465 gagaccttgaggaggagcacactccgaggtcccaagccaataccgctaggccagcccaagtgg 7949527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 27965537 - 27965583
Alignment:
Q  29 gcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||||| | ||||||||||| |||||||||||||| ||||||||    
T  27965537 gcacactcccagatcccaagccaataccactaggccaacccaagtgg 27965583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 29312271 - 29312321
Alignment:
Q  21 aaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaa 71  Q
    ||||||||| ||||||| | ||||||||||| |||||||||||||| ||||    
T  29312271 aaggaggagaacactcccacatcccaagccaataccactaggccaacccaa 29312321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 51250533 - 51250595
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||| ||| ||| |||||||||||| | ||||||||||| |||||| ||||||| ||||||||    
T  51250533 gagatcttgaggcggagcacactcccagatcccaagccaataccaccaggccaacccaagtgg 51250595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 28635752 - 28635699
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||||||||||| | |||||||| ||||||||| ||| ||| ||||||||    
T  28635752 aggaggagcacactcccagatcccaagtcagtaccaccaggacaacccaagtgg 28635699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 31794276 - 31794337
Alignment:
Q  14 agaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||| |||||||||||||||| || |||||||||| |||||||||||||| ||||||||    
T  31794276 agaccttgaggaggagcacactcccaagtcccaagccaataccactaggccaacccaagtgg 31794337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 19528338 - 19528400
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| ||||||||||||||| || ||||||||||| |||||| ||||||| ||||||||    
T  19528338 gagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaacccaagtgg 19528400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 33700784 - 33700846
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| | || |||||||| |||||||||||||| ||||||||    
T  33700784 gagaccttgaggaggagcacactcccagattccaagccaataccactaggccaacccaagtgg 33700846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 41508896 - 41508834
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| | ||||||| |||||||||| ||||||| ||||||||    
T  41508896 gagaccttgaggaggagcacactcccagatcccaaaccagtaccaccaggccaacccaagtgg 41508834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 52336785 - 52336838
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaa 66  Q
    |||| |||||||||||||||||||| | ||||||||||| ||||||||||||||    
T  52336785 gagatcttaaggaggagcacactcccagatcccaagccaataccactaggccaa 52336838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 8177196 - 8177246
Alignment:
Q  16 accttaaggaggagcacactcctaaatcccaagccagtaccactaggccaa 66  Q
    ||||| |||||||||||||||| | ||||||||||| ||||||||||||||    
T  8177196 accttgaggaggagcacactcccagatcccaagccaataccactaggccaa 8177246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 9165206 - 9165268
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||| || |||||||||||||||| |  |||||||||| |||||||||||||| ||||||||    
T  9165206 gagactttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 9165268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 15786331 - 15786393
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| | ||||||||||| ||| ||||| |||| ||||||||    
T  15786331 gagaccttgaggaggagcacactcccagatcccaagccaatactactagaccaacccaagtgg 15786393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 26232398 - 26232463
Alignment:
Q  14 agaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggattt 79  Q
    |||||| ||| ||||||||||||| | ||| ||||||| ||||||||| |||| ||||||||||||    
T  26232398 agacctcaagcaggagcacactcccagatctcaagccaataccactagaccaacccaagtggattt 26232463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 36371534 - 36371473
Alignment:
Q  14 agaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||| |||||||||||||||| |  | |||||||| |||||||||||||| ||||||||    
T  36371534 agaccttgaggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgg 36371473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 8904479 - 8904412
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggattta 80  Q
    |||||||| |||||||||||||||  | |||||||| || ||| |||||||||| |||||||| ||||    
T  8904479 gagaccttgaggaggagcacactcacatatcccaagtcaatactactaggccaacccaagtgggttta 8904412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 2799927 - 2799865
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| | ||| ||||||  |||||||||||||| | ||||||    
T  2799927 gagaccttgaggaggagcacactcccagatctcaagcctataccactaggccaagcgaagtgg 2799865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 6122859 - 6122801
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaa 71  Q
    |||||||| |||||||||||||||| || |||||||||  |||||||||| ||| ||||    
T  6122859 gagaccttgaggaggagcacactcccaagtcccaagcctataccactagggcaacccaa 6122801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 18459243 - 18459305
Alignment:
Q  14 agaccttaaggaggagcacactcctaaatcccaagcc-agtaccactaggccaatccaagtgg 75  Q
    |||||| ||||||||||||||||| || ||||||||| | ||||||||| |||| ||||||||    
T  18459243 agacctcaaggaggagcacactcccaagtcccaagccaattaccactagaccaacccaagtgg 18459305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 25494080 - 25494142
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||  ||||| |||| ||||||| ||||||||||| |||||||||| |||| |||||||    
T  25494080 gagacctcgaggagaagcaaactcctagatcccaagccaataccactaggtcaattcaagtgg 25494142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 52116792 - 52116850
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaa 71  Q
    ||||| || |||||||||||||||| || |||||||||| |||||| ||||||| ||||    
T  52116792 gagacattgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaa 52116850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 21268013 - 21268074
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatttaaaa 83  Q
    |||||||||||||||| || |||||||||| ||| ||||| ||||  ||||||| |||||||    
T  21268013 aggaggagcacactcccaagtcccaagccaatactactagcccaactcaagtgggtttaaaa 21268074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 24730447 - 24730386
Alignment:
Q  15 gaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgga 76  Q
    |||||| | |||||||||||||| | ||| |||| || |||||||||||||| |||||||||    
T  24730447 gaccttgaagaggagcacactcccagatctcaagacaataccactaggccaacccaagtgga 24730386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 30420366 - 30420313
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||||||||||||| |||||||||||  |||||| |||||| | ||||||    
T  30420366 aggaggagcacactcctatatcccaagccaaaaccacttggccaacctaagtgg 30420313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 35187978 - 35187913
Alignment:
Q  19 ttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatttaaaat 84  Q
    ||||||| ||||||||||  || | ||||| || |||||||||||||| |||| ||||||||||||    
T  35187978 ttaaggaagagcacactctcaagttccaagtcaataccactaggccaacccaaatggatttaaaat 35187913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 44046162 - 44046206
Alignment:
Q  16 accttaaggaggagcacactcctaaatcccaagccagtaccacta 60  Q
    ||||| |||||||||||||||| | ||||||||||| ||||||||    
T  44046162 accttgaggaggagcacactcccagatcccaagccaataccacta 44046206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 16436682 - 16436611
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatttaaaatg 85  Q
    |||||||| |||||||||||||||| || |||||||||| |||||||||||||| |||||||  |||||||||    
T  16436682 gagaccttgaggaggagcacactcc-aagtcccaagccaataccactaggccaacccaagtgagtttaaaatg 16436611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 21549148 - 21549210
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||| ||||||||||||||||||| |  |||||||||| |||||||||||||| ||||||||    
T  21549148 gagactttaaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 21549210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 25627122 - 25627060
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| || | |||||||| |||||||||||||| ||||||||    
T  25627122 gagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgg 25627060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 26598578 - 26598527
Alignment:
Q  24 gaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||||||||  | ||||||||||| |||||||||||||||||||||||    
T  26598578 gaggagcacactctcagatcccaagccaataccactaggccaatccaagtgg 26598527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 30883209 - 30883276
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggattta 80  Q
    |||||||| |||||||||||||||| |  |||||||||| ||||||||| |||| |||||||| ||||    
T  30883209 gagaccttgaggaggagcacactcccaggtcccaagccaataccactagaccaacccaagtgggttta 30883276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 29075837 - 29075784
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || ||||||||    
T  29075837 aggaggagcacactcccagatcccaagccaataccactaggcaaacccaagtgg 29075784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 87434 - 87501
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggattta 80  Q
    |||||||| |||||||||||||||| | || ||||| || |||||||||||||| | |||||| ||||    
T  87434 gagaccttgaggaggagcacactcccagattccaaggcaataccactaggccaaccgaagtgggttta 87501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 16457875 - 16457813
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| |  |||||||||| |||||| ||||||| | ||||||    
T  16457875 gagaccttgaggaggagcacactccaaggtcccaagccaataccaccaggccaacctaagtgg 16457813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 17028275 - 17028337
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| || |||||| ||| ||| |||||| ||| ||||||||    
T  17028275 gagaccttgaggaggagcacactcccaagtcccaacccaatacaactaggtcaacccaagtgg 17028337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 37258380 - 37258434
Alignment:
Q  16 accttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatcca 70  Q
    ||||| |||||||||||||||||| ||||||||| | |||||||| |||| ||||    
T  37258380 accttgaggaggagcacactcctagatcccaagctaataccactaagccactcca 37258434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 34984870 - 34984809
Alignment:
Q  14 agaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||| |||||||||||||||| |  | |||||||| ||||||||| |||| ||||||||    
T  34984870 agaccttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgg 34984809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 22737137 - 22737085
Alignment:
Q  23 ggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||||||||| | || |||||||||| ||||||||| |||| ||||||||    
T  22737137 ggaggagcacacttccaagtcccaagccaataccactagaccaacccaagtgg 22737085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 35796639 - 35796683
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaa 66  Q
    ||||||||||||||||||| ||| || ||| ||||||||||||||    
T  35796639 aggaggagcacactcctaagtccaaaaccaataccactaggccaa 35796683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 2203557 - 2203495
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| |  |||||||||| |||||||||||||| ||||||||    
T  2203557 gagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 2203495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 44780125 - 44780187
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| || |||||||||| | |||||||||||| ||||||||    
T  44780125 gagaccttgaggaggagcacactcccaagtcccaagccaatgccactaggccaacccaagtgg 44780187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 16852405 - 16852336
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatttaaa 82  Q
    |||||||  |||||||||||||||| |  |||||||||| |||||||||||||| |||||||| ||||||    
T  16852405 gagacctcgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtttaaa 16852336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 19703498 - 19703565
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggattta 80  Q
    |||||||| |||||||||||||||  |  |||||||||| |||||||||||||| |||||||| ||||    
T  19703498 gagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaacccaagtgggttta 19703565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 3624645 - 3624583
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| | |||||||||||||| |  |||||||||| |||||||||||||| ||||||||    
T  3624645 gagaccttgaagaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 3624583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 6436566 - 6436628
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||||  |||||||||||||||||| |||||||||| |||||| ||| ||| ||||||||    
T  6436566 gagaccttgcggaggagcacactcctaagtcccaagccaataccaccagggcaacccaagtgg 6436628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 30483904 - 30483957
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||||||||||| | ||||||||||| ||||||| |||||| ||||||||    
T  30483904 aggaggagcacactcccatatcccaagccaataccactgggccaacccaagtgg 30483957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 6536585 - 6536538
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccacta 60  Q
    |||||||| ||||||||||||||||||  |||||||||| ||||||||    
T  6536585 gagaccttgaggaggagcacactcctaggtcccaagccaataccacta 6536538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 6569785 - 6569844
Alignment:
Q  16 accttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||| ||||||||||||||||| | ||||||||||| || ||||||||||| | ||||||    
T  6569785 acctaaaggaggagcacactcccagatcccaagccaatatcactaggccaacctaagtgg 6569844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 12988490 - 12988431
Alignment:
Q  16 accttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||| |||||||||||||| | |  | |||||||| |||||||||||||||||||||||    
T  12988490 accttgaggaggagcacacttccaggttccaagccaataccactaggccaatccaagtgg 12988431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 11819841 - 11819783
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaa 71  Q
    |||||||| |||||||||||||||| || |||||||||  |||||||||| ||| ||||    
T  11819841 gagaccttgaggaggagcacactcccaagtcccaagcctataccactagggcaacccaa 11819783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 18540363 - 18540301
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| ||||| || ||||||| |  |||||||||| |||||||||||||| ||||||||    
T  18540363 gagaccttgaggagaagtacactcccaggtcccaagccaataccactaggccaacccaagtgg 18540301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 23361660 - 23361722
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| | |||||||| || |||||| ||| ||| ||||||||    
T  23361660 gagaccttgaggaggagcacactcccatatcccaagtcaataccaccaggtcaacccaagtgg 23361722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 26688930 - 26688868
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| |  ||||||||||  ||||| ||||||| ||||||||    
T  26688930 gagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgg 26688868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 29431068 - 29431014
Alignment:
Q  21 aaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||||||||||||| || |||||||||| |||| | ||||||| ||||||||    
T  29431068 aaggaggagcacactcccaagtcccaagccaataccgccaggccaacccaagtgg 29431014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 29858060 - 29858122
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||  ||||||||||||||||    |||||||||| |||||| ||||||||||||||||    
T  29858060 gagacctcgaggaggagcacactccctggtcccaagccaataccaccaggccaatccaagtgg 29858122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 35025257 - 35025207
Alignment:
Q  16 accttaaggaggagcacactcctaaatcccaagccagtaccactaggccaa 66  Q
    |||| ||||||||||| ||| ||||||||||||||| |||||| |||||||    
T  35025257 acctcaaggaggagcatacttctaaatcccaagccaataccaccaggccaa 35025207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 35690075 - 35690141
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggattt 79  Q
    |||||||| |||||||||| || || | ||||||||||| ||||||||||||||  ||| |||||||    
T  35690075 gagaccttgaggaggagcaaacacccagatcccaagccaataccactaggccaacacaaatggattt 35690141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 3826798 - 3826855
Alignment:
Q  23 ggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggattta 80  Q
    ||||||||||||||  ||||  ||||||| |||||||||||||| |||||||| ||||    
T  3826798 ggaggagcacactctcaaatggcaagccaataccactaggccaacccaagtgggttta 3826855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 20994479 - 20994531
Alignment:
Q  23 ggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||||||||||| |  ||||||| || |||||||||||||| ||||||||    
T  20994479 ggaggagcacactcccaggtcccaagtcaataccactaggccaacccaagtgg 20994531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 12188317 - 12188376
Alignment:
Q  16 accttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||| |||||||||||||||| |  |||||||||| |||||||||||||| ||||||||    
T  12188317 accttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgg 12188376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 10338185 - 10338255
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatttaaaa 83  Q
    |||||||| ||||||||||||||||||  |||||||||| |||||| | ||||| |||||||  |||||||    
T  10338185 gagaccttgaggaggagcacactcctaggtcccaagccaataccaccatgccaacccaagtgagtttaaaa 10338255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 34293836 - 34293892
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtggatt 78  Q
    |||||||||||||||| |||| |||| ||| |||||||||| ||| |||||||||||    
T  34293836 aggaggagcacactcccaaattccaaaccaataccactaggtcaacccaagtggatt 34293892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 27989671 - 27989729
Alignment:
Q  16 accttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtg 74  Q
    |||||||| ||||||| ||||| || | |||||| | ||||||||||||||||||||||    
T  27989671 accttaagaaggagcatactcccaagttccaagctaataccactaggccaatccaagtg 27989729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 21418526 - 21418477
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaa 71  Q
    |||||||||||||||| || |||||||||| |||||| ||||||| ||||    
T  21418526 aggaggagcacactcccaagtcccaagccaataccaccaggccaacccaa 21418477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 6776627 - 6776679
Alignment:
Q  22 aggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtg 74  Q
    ||||||||||||| || | ||||||||||| |||||| ||||||| |||||||    
T  6776627 aggaggagcacacccccagatcccaagccaataccaccaggccaacccaagtg 6776679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 94982 - 95044
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    |||||||| |||||||||||||||| |  | |||||||| |||||||||||||| ||||||||    
T  94982 gagaccttgaggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgg 95044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 15788 - 15841
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaa 66  Q
    |||||||| |||||||||| ||||| ||||||||||||| |||||| |||||||    
T  15788 gagaccttgaggaggagcatactccaaaatcccaagccaataccaccaggccaa 15841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 24107 - 24056
Alignment:
Q  24 gaggagcacactcctaaatcccaagccagtaccactaggccaatccaagtgg 75  Q
    ||||||||||||||||| ||||||| || ||||| |||||||| ||||||||    
T  24107 gaggagcacactcctaagtcccaagtcaataccattaggccaacccaagtgg 24056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 4402 - 4356
Alignment:
Q  16 accttaaggaggagcacactcctaaatcccaagccagtaccactagg 62  Q
    |||||||| ||||||||||||| ||||||||||||  ||||||||||    
T  4402 accttaagaaggagcacactcccaaatcccaagcctataccactagg 4356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 6930 - 6988
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggccaatccaa 71  Q
    ||||| || ||||||||||||||||  | |||||||||| |||||||||||||| ||||    
T  6930 gagactttgaggaggagcacactccccagtcccaagccaataccactaggccaacccaa 6988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 11593 - 11541
Alignment:
Q  13 gagaccttaaggaggagcacactcctaaatcccaagccagtaccactaggcca 65  Q
    |||||||  |||||||||||||||| | ||||||||||| |||||| ||||||    
T  11593 gagacctcgaggaggagcacactcccagatcccaagccaataccaccaggcca 11541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University