View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_low_12 (Length: 428)
Name: NF6487_low_12
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_12 |
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| [»] scaffold0318 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 21615526 - 21615927
Alignment:
| Q |
19 |
aaggagtgttgaagagaagagtttggttcctaagaaatcaaatgttttgcttttgcaaactttggtttttgctgataaggcgaagacagaagctgctata |
118 |
Q |
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| T |
21615526 |
aaggagtgttgaagagaagagtttggttcctaagaaatcaaatgttttgcttttgcaaactttggtttttgctgataaggcgaagacagaagctgctata |
21615625 |
T |
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| Q |
119 |
actgaattgctcgttggtttgaattatgtttggaggtttgagagggaaatgacggctaaggctttgtttcaatgtaccgataatttcaatgggtatttga |
218 |
Q |
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| T |
21615626 |
actgaattgctcgttggtttgaattatgtttggaggtttgagagggaaatgacggctaaggctttgtttcaatgtaccgataatttcaatgggtatttga |
21615725 |
T |
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| Q |
219 |
gtttgtacaaacctagctaagtgcatatttgtttgtacaatgatttatatgagcgcagacgtgctatgagattgaaaattcaatgtgtagcttagcaaaa |
318 |
Q |
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| T |
21615726 |
gtttgtacaaacctagctaagtgcatatttgtttgtgcaatgatttatatgagcgcagacgtgctatgagattgaaaattcaatgtgtagcttagcaaaa |
21615825 |
T |
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| Q |
319 |
tttcggtctacatgataataggacgcatgatatttataatttggatgcagaaccaaacaaatgctgatgagggttttgctttttcgtttcgtttttcatc |
418 |
Q |
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| T |
21615826 |
tttcggtctacatgataataggacacatgatatttataatttggatgcagaaccaaacaaatgctgatgagggttttgctttttcgtttcgtttttcatc |
21615925 |
T |
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| Q |
419 |
tc |
420 |
Q |
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|| |
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| T |
21615926 |
tc |
21615927 |
T |
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Target: scaffold0318 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0318
Description:
Target: scaffold0318; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 15739 - 15873
Alignment:
| Q |
59 |
aatgttttgcttttgcaaactttggtttttgctgataaggcgaagacagaagctgctataactgaattgctcgttggtttgaattatgtttggaggtttg |
158 |
Q |
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||||||||||||||||| |||||| ||||||| | || | |||||| |||||||| |||||||| ||||| ||||| ||||||||| |||||||||||| |
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| T |
15739 |
aatgttttgcttttgcagactttgttttttgcaaacaaagagaagactgaagctgccataactgagttgcttgttgggttgaattatatttggaggtttg |
15838 |
T |
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| Q |
159 |
agagggaaatgacggctaaggctttgtttcaatgt |
193 |
Q |
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| T |
15839 |
agagggaaatgactgctaaagctttgtttgaatgt |
15873 |
T |
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