View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_low_15 (Length: 372)
Name: NF6487_low_15
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 41146281 - 41146634
Alignment:
| Q |
19 |
aaatgataatccacaataagaaattttgcggttccacttgctcatgaagcaaacccaataataataccagtgacagtgagcacgcacagtatgagcctgc |
118 |
Q |
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| T |
41146281 |
aaatgataatccacaataagaaattttgcggttccacttgctcatgaagcaaacccaataataataccagtgacagtgagcacgcacagtatgaacctgc |
41146380 |
T |
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| Q |
119 |
aaaattctcataatatgcataaactcaatctacagctgtagctaggcataaagaatcttgacgaagataatatcctcatccctccagcttttttcaagtt |
218 |
Q |
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| T |
41146381 |
aaaattctcataatatgcataaactcaatctacagctgtagctaggcataaagaatcttgacgaagataatatcctcatccctccagcttttttcaagtt |
41146480 |
T |
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| Q |
219 |
caaaatcccaagtgatttttaaagccatctggtcactaactcaattatatatgcatccaacacaggggcatctaatgcacatggaagctatgatgcaaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41146481 |
caaaatcccaagtgatttttaaagccatctggtcactaactcaattatatatgcatccaacacaggggcatctaatgcccatggaagctatgatgcaaac |
41146580 |
T |
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| Q |
319 |
aggtttacatgcttgtagcgtgtctgcttccttatcccagatgttctatataat |
372 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |
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| T |
41146581 |
aggtttacatgcttgtagcgtgtcagcttccttagcccagatgttcaatataat |
41146634 |
T |
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