View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_low_16 (Length: 370)
Name: NF6487_low_16
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 82 - 360
Target Start/End: Original strand, 27836429 - 27836706
Alignment:
| Q |
82 |
caaaatgtgttgttgtggagattatttgtgaaaatgatttgatagtatagggnnnnnnnttgaataaatggacttctgaaatctatttgttaatcacctt |
181 |
Q |
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| T |
27836429 |
caaaatgtgt-gttgtggagattatttgtgaagatgatttgatagtatagggaaaaaaattgaataaatggacttctgaaatctatttgttaatcacctt |
27836527 |
T |
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| Q |
182 |
tggatattgagcttcagcaagagattcataatgctccaactctttcctgtctaaaagaaaatagtttataagatacttggctaacaaaaaggaacaaatt |
281 |
Q |
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| T |
27836528 |
tggatattgagcttcagcaagagattcataatggtccaactctttcctgtctaaaagaaaatagtttataagatacttggctaacaaaaaggaacaaatt |
27836627 |
T |
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| Q |
282 |
tttgcaaagttgaaaattgaaaaaatgtgcaacttaaatcttacatgtacttttggttcttgaaatttaaaaacctttg |
360 |
Q |
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| T |
27836628 |
tttgcaaagttgaaaattggaaaaatgtgcaacttaaatcttacatgtacttttggttcttgaaatttaaaaacctttg |
27836706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 27836332 - 27836392
Alignment:
| Q |
19 |
aaactgtacttggaattattagttattagaacaa-taaagtctcagtttaattaaaatatg |
78 |
Q |
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| T |
27836332 |
aaactgtacttggatttattagttattagaacaattaaagtctcagtttaattaaaatatg |
27836392 |
T |
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