View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_low_18 (Length: 356)
Name: NF6487_low_18
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 4400015 - 4399671
Alignment:
| Q |
1 |
tcaaatattgattatatattattgtccatgcatggaagaacatgaactcatagcaacaactccaagtttctgaagattaagcttgacaacagtgtcaaca |
100 |
Q |
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| T |
4400015 |
tcaaatattgattatatattattgtccatgcatggaagaacatgaactcatagcaacaactccaagtttctgaagattaagcttgacaacagtgtcaaca |
4399916 |
T |
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| Q |
101 |
aacatcttggtatcttcttcagtgttcccatgtggaatatcaacaatataagattccaaaacaatagtataaaccttaccttcattgttgacaaactcat |
200 |
Q |
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| T |
4399915 |
aacatcttggtatcttcttcagtgttcccatgtggaatatcaacaatataagattccaaaacaatagtataaaccttaccttcattgttgacaaactcat |
4399816 |
T |
|
| Q |
201 |
taaccgaagtaactgaacgatagttttgaagacgatgttcaccaccaacaactctaaaacttattacatgtttttcatcatccaaaatctctaatctttc |
300 |
Q |
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| T |
4399815 |
taaccgaagtaaccgaacgatagttttgaagacgatgttcaccaccaacaactctaaaacttattacatgtttttcatcatccaaaatctctaatctttc |
4399716 |
T |
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| Q |
301 |
ggtacttgtcgaagccggtaaacccgaaacaacggtaacttctct |
345 |
Q |
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| T |
4399715 |
ggtacttgtcgaagccggtaaacccgaaacaacggtaacttctct |
4399671 |
T |
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