View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6487_low_19 (Length: 352)
Name: NF6487_low_19
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 4916596 - 4916935
Alignment:
| Q |
1 |
ccagtcaccttgattctctctctgatcatgataatattgtgaaaatatatatgtacttatttgaacagaactggaaacctacggagaaatctgcaaaaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4916596 |
ccagtcaccttgattctctctctgatcatgataatattgtgaaaatatatatgtacttatttgaacagaactggaaacctaaggagaaatctgcaaaaaa |
4916695 |
T |
|
| Q |
101 |
gatttgggttctggatggaataaatggtggtaagtgggttgattctgaagaatgtatcatacatgaccctgctaaactttttgctggttcaaaattttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4916696 |
gatttgggttctggatggaataaatggtggtaagtgggttgattctgaagaatgtatcatacatgaccctgctaaactttttgctggttcaaaattttat |
4916795 |
T |
|
| Q |
201 |
tttcttgaagatatctatgatagtaatattcttgaatttttcaatgcaatattgaaagtcaagaacaagccgtcactagatgattatgttgacctttgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4916796 |
tttcttgaagatatctatgatagtaatattcttgaatttttcaatgcaatattgaaagtcaagaacaagccgtcactagatgattatgttgacctttgga |
4916895 |
T |
|
| Q |
301 |
atgattgggggagttcagtgaaacaattgtcacatgatga |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
4916896 |
atgattgggggagttcagtgaaacaattgtcacatgatga |
4916935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 5 - 340
Target Start/End: Complemental strand, 2946501 - 2946172
Alignment:
| Q |
5 |
tcaccttgattctctctctgatcatgataatattgtgaaaatatatatgtacttatttgaacagaactggaaacctacggagaaatctgcaaaaaagatt |
104 |
Q |
| |
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||||||||| || || ||||||||||| | ||||||||||||||| | |||||||| |||||| ||||||||||| ||||| | ||||||||||| || |
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|
| T |
2946501 |
tcaccttgagtccctatctgatcatgacagtattgtgaaaatatacaagtacttatgtgaacacaactggaaaccggaggagacagctgcaaaaaaggtt |
2946402 |
T |
|
| Q |
105 |
tgggttctggatggaataaatggtggtaagtgggttgattctgaagaatgtatcatacatgaccctgctaaactttttgctggttcaaaattttattttc |
204 |
Q |
| |
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||| ||||||||| ||| || |||||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||| |||| ||| |
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| T |
2946401 |
tggattctggatgcaattaaaagtggtaagtgggttgattctgaagaatgcatcatacacgacccacctaaactttt---tggttcaaaatattatgttc |
2946305 |
T |
|
| Q |
205 |
ttgaagatatctatgatagtaatattcttgaatttttcaatgcaatattgaaagtcaagaacaagccgtcactagatgattatgttgacctttggaatga |
304 |
Q |
| |
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|||||||| |||||||||| ||||||||| ||||||||||| |||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
2946304 |
ttgaagatctctatgatagagatattcttgtttttttcaatgc---attggaagtcaagaagaagccctcactagatgattatgttgacctttggaatga |
2946208 |
T |
|
| Q |
305 |
ttgggggagttcagtgaaacaattgtcacatgatga |
340 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||||||| |
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|
| T |
2946207 |
ttggggaagttcagtgaagcaattgtcatatgatga |
2946172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 3012912 - 3013251
Alignment:
| Q |
1 |
ccagtcaccttgattctctctctgatcatgataatattgtgaaaatatatatgtacttatttgaacagaactggaaacctacggagaaatctgcaaaaaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||| |||||||||| | ||| |||| | |||| |||||||||||| |||||| |||||||||| |
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| T |
3012912 |
ccagtcaccttgactctctctctgatcatgataccattttgaaaatatacaagtatttatgtcaacacaactggaaacctgacgagaaagctgcaaaaaa |
3013011 |
T |
|
| Q |
101 |
gatttgggttctggatggaataaatggtggtaagtgggttgattctgaagaatgtatcatacatgaccctgctaaactttttgctggttcaaaattttat |
200 |
Q |
| |
|
||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||| ||||| |
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| T |
3013012 |
gatttggattcttgatggaattgtaggtggtaagtgggttgattctgaagaatgcatcgtacacgaccctgctaaactttt---tggttcaaagttttac |
3013108 |
T |
|
| Q |
201 |
tttcttgaagatatctatgatagta---atattcttgaatttttcaa---tgcaatattgaaagtcaagaacaagccgtcactagatgattatgttgacc |
294 |
Q |
| |
|
|| | |||||||||||||||| | |||||||| |||||| | ||||| || | ||||||| ||||| || ||||| ||||||||||||| |
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|
| T |
3013109 |
gttttagaagatatctatgataacaacgatattcttctttttttctactttgcaa---tggatatcaagaataagccctcgctagaagattatgttgacc |
3013205 |
T |
|
| Q |
295 |
tttggaatgattgggggagttcagtgaaacaattgtcacatgatga |
340 |
Q |
| |
|
|||||||||||||||||| |||| |||| |||||||| ||||||| |
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|
| T |
3013206 |
tttggaatgattgggggaattcaatgaagcaattgtcctatgatga |
3013251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2929867 - 2929651
Alignment:
| Q |
1 |
ccagtcaccttgattctctctctgatcatgataatattgtgaaaatatatatgtacttatttgaacagaactggaaacctacggagaaatctgcaaaaaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||| | || |||| | || | ||||||||| || |||||| ||||||| || |
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|
| T |
2929867 |
ccagtcaccttgatactctctctgatcatgataccattgtgaaaatatacaagtttttatatcaatacaactggaaagctgaggagaatgctgcaaagaa |
2929768 |
T |
|
| Q |
101 |
gatttgggttctggatggaataaatggtggtaagtgggttgattctgaagaatgtatcatacatgaccctgctaaactttttgctggttcaaaattttat |
200 |
Q |
| |
|
| ||||| |||| |||||||| || |||||||||| ||||||||| ||||||| || ||||||||||||| |||||||| ||||||||| |||||| |
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| T |
2929767 |
ggtttggattcttgatggaattaaaggtggtaagttcgttgattctaaagaatgcgtcttacatgaccctgccaaactttt---tggttcaaagttttat |
2929671 |
T |
|
| Q |
201 |
tttcttgaagatatctatga |
220 |
Q |
| |
|
|||| |||||||||||||| |
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| T |
2929670 |
gttctagaagatatctatga |
2929651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 37795096 - 37795022
Alignment:
| Q |
144 |
tctgaagaatgtatcatacatgaccctgctaaactttttgctggttcaaaattttattttcttgaagatatctatgat |
221 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| ||||| ||||| |||||| ||| |||||||||||||||||||| |
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|
| T |
37795096 |
tctgaagaatgcatcatacatgaccctgataagctttt---tggtttaaaattctatgttcttgaagatatctatgat |
37795022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 277 - 340
Target Start/End: Complemental strand, 2929594 - 2929531
Alignment:
| Q |
277 |
tagatgattatgttgacctttggaatgattgggggagttcagtgaaacaattgtcacatgatga |
340 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| ||| || | ||||||||| ||||||| |
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|
| T |
2929594 |
tagaagattatgttgacctctggaatgattgggggagctcaatggagcaattgtcatatgatga |
2929531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 37794970 - 37794912
Alignment:
| Q |
273 |
tcactagatgattatgttgacctttggaatgattgggggagttcagtgaaacaattgtc |
331 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||| ||||||| || || ||||||| |
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|
| T |
37794970 |
tcacttgatgattatgttgatctttggaatgaatgggagagttcattggaagaattgtc |
37794912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 6 - 332
Target Start/End: Original strand, 1507250 - 1507576
Alignment:
| Q |
6 |
caccttgattctctctctgatcatgataatattgtgaaaatatatatgtacttatttgaacagaactggaaacctacggagaaatctgcaaaaaagattt |
105 |
Q |
| |
|
|||||| | |||||||||||||||| || |||||||||||||||| |||||||||||||| || ||||||||| | ||| | ||||| ||||||| |
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|
| T |
1507250 |
caccttaactctctctctgatcatggtaccattgtgaaaatatataattacttatttgaacacaattggaaacctgagaagagagaggcaaacaagattt |
1507349 |
T |
|
| Q |
106 |
gggttctggatgga-ataaa--tggtggtaagtgggttgattctgaagaatgtatcatacatgaccctgctaaactttttgctggttcaaaattttattt |
202 |
Q |
| |
|
|| |||| |||||| ||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||| | |
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|
| T |
1507350 |
ggattcttgatggagataaaggtggtggtaagtgggttgattctgaggaatgtgtcatacacgaccctgctaaactttt---cggttcaaaattttatat |
1507446 |
T |
|
| Q |
203 |
tcttgaagatatctatgatagtaatattcttgaatttttcaatgcaatattgaaagtcaagaacaagccgtcactagatgattatgttgacctttggaat |
302 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||||| || | || |||||||||||||||| |||||||| || |||||||||||||||||| |
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|
| T |
1507447 |
tcttgaagatatctatgatggcaatattcttgtttttttgtatcttgcaatggaagtcaagaacaagccctcactagaagactatgttgacctttggaat |
1507546 |
T |
|
| Q |
303 |
gattgggggagttcagtgaaacaattgtca |
332 |
Q |
| |
|
|||||||||| |||| || | ||||||||| |
|
|
| T |
1507547 |
gattgggggaattcaatggagcaattgtca |
1507576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 28024109 - 28024033
Alignment:
| Q |
144 |
tctgaagaatgtatcatacatgaccctgctaaactttttgctggttcaaaattttattttcttgaagatatctatgatag |
223 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| ||||| ||||| |||||| ||| |||||||||||||||||||||| |
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|
| T |
28024109 |
tctgaagaatgcatcatacatgaccctgataagctttt---tggtttaaaattctatgttcttgaagatatctatgatag |
28024033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 28023983 - 28023925
Alignment:
| Q |
273 |
tcactagatgattatgttgacctttggaatgattgggggagttcagtgaaacaattgtc |
331 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||| ||||||| || || ||||||| |
|
|
| T |
28023983 |
tcacttgatgattatgttgatctttggaatgaatgggagagttcattggaagaattgtc |
28023925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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