View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_low_20 (Length: 351)
Name: NF6487_low_20
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_20 |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 32464563 - 32464239
Alignment:
| Q |
17 |
cacatgtgtgttacaccatgagactcaatcaaacggtagatcgtaggcgcgtcaatcctacgcgcgcagatatttactcctccaactgcagccattgccc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32464563 |
cacatgtgtgttacaccatgagactcaatcaaacggtagatcgtcggcgcgtcaatcctacgcgcgcagatatttattcctccaactgcagccattgccc |
32464464 |
T |
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| Q |
117 |
acgggtagctccatccattagaatgaaacatcggcaatgtccacaagaaaactggttgaaccggaactgaccaatcaacgagtgaatcaagggaaacaat |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32464463 |
acgggtagctccatccattagaatgaaacataggcaatgtccacaagaaaaccggttgaaccggaactgaccaatcaacgagtgaatcaagggaaacaat |
32464364 |
T |
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| Q |
217 |
gaacgttgctctatgacaatgcactacacctttcggagacgaagtcgttccggaggtgtagtttaacgtaattggatcccactctgagtcaggtcgaatc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||| |
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| T |
32464363 |
gaacgttgctctatgacaatgcactacacctttcggagatgaagtcgttccggaggtgtagtttaacgtaataggatcccactctgagttaggttgaatc |
32464264 |
T |
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| Q |
317 |
catttgaaatatggatcaccctttg |
341 |
Q |
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| T |
32464263 |
catttgaaatttggatcaccttttg |
32464239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 32456572 - 32456900
Alignment:
| Q |
17 |
cacatgtgtgttacaccatgagactcaatcaaacggtagatcgtaggcgcgtcaatcctacgcgcgcagatatttactcctccaactgcagccattgccc |
116 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||| ||||||||| | ||||||||||||||||||||||| |
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| T |
32456572 |
cacatgtgtgttacaccatgagattcaatcaaagtatagatcgtcggcgcgtctgtcctacgcgtgcagatattaattcctccaactgcagccattgccc |
32456671 |
T |
|
| Q |
117 |
acgggtagctccatccattagaatgaaacatcggcaatgtccacaagaaaactggttgaaccggaactgaccaatcaacgagtgaatcaagggaaacaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||| |||||||| |||||||| |
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| T |
32456672 |
acgggtagctccatccattagaatgaaacatcggtaatgtccacaagaaaaccggttgaaccggaactgaccagtcaatgagagaatcaagagaaacaat |
32456771 |
T |
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| Q |
217 |
gaacgttgctctatgacaatgcactacacctttcggagacgaagtcgttccggaggtgtagtttaacgtaattggatcccactctgagtcaggtcgaatc |
316 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32456772 |
gaacgttgctctgtgacaatgcactacacctttcggagacgacgtcgttccggaggtgtagtttaacgtaattggatcccactctgagtcaggtcggatc |
32456871 |
T |
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| Q |
317 |
catttgaaatatggatcaccctttgctac |
345 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32456872 |
catttgaaatatggatcaccctttgctac |
32456900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 23993 - 23665
Alignment:
| Q |
17 |
cacatgtgtgttacaccatgagactcaatcaaacggtagatcgtaggcgcgtcaatcctacgcgcgcagatatttactcctccaactgcagccattgccc |
116 |
Q |
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||||||||||||||||||||||| ||||||| | |||||||| |||||||| ||||||| | ||||||||| |||||| || ||||||||| ||| |
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| T |
23993 |
cacatgtgtgttacaccatgagattcaatcagattgtagatcgatggcgcgtctgtcctacgtgtgcagatattcgttcctccgacggcagccattcccc |
23894 |
T |
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| Q |
117 |
acgggtagctccatccattagaatgaaacatcggcaatgtccacaagaaaactggttgaaccggaactgaccaatcaacgagtgaatcaagggaaacaat |
216 |
Q |
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|||| ||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||| || |||||||||| ||| |||||||| |||||||| |
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| T |
23893 |
acggatagctccatccgttagaatgaaacatttgcaacgtccacaagaaaactggttgaaccggtaccgaccaatcaatgagagaatcaagtgaaacaat |
23794 |
T |
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| Q |
217 |
gaacgttgctctatgacaatgcactacacctttcggagacgaagtcgttccggaggtgtagtttaacgtaattggatcccactctgagtcaggtcgaatc |
316 |
Q |
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|||||||||||| ||||||||||| |||||||| |||||||| || ||||||||||||||||| | |||||||||||||||||| | ||| || || ||| |
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| T |
23793 |
gaacgttgctctgtgacaatgcacaacaccttttggagacgacgttgttccggaggtgtagttcagcgtaattggatcccactcggtgtcgggacggatc |
23694 |
T |
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| Q |
317 |
catttgaaatatggatcaccctttgctac |
345 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
23693 |
catttgaaatttggatcaccctttgctac |
23665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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