View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_low_23 (Length: 331)
Name: NF6487_low_23
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 12572079 - 12572379
Alignment:
| Q |
16 |
aatatccagcctaaaaaactgcaacaaaatatacttaaaattgaaccttaggatagctacaaacactgtgccaacctataaattataacnnnnnnnnnnn |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12572079 |
aatatccagcctaaaaaactgcaacaaaatatactcaaaattgaaccttaggatagctacaaacactgtgccaacctataaattataacaaaataaaaag |
12572178 |
T |
|
| Q |
116 |
nnnnnnnnnttgtgttagactaactttggggatgactctataaagac---ctgcataatttcaattttaaattt--aagatttataacaatgtaataaag |
210 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| | |||||||||||||||||||||||| |
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| T |
12572179 |
acaaaaa--ttgtgttagactaactttggggatgattctataaagattctctgcataattttaattttaaatgtctaagatttataacaatgtaataaag |
12572276 |
T |
|
| Q |
211 |
taacaataaatttcactaaattgaatcaatgattgggcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaattgaagg |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12572277 |
taacaataaatttcactaaattgaatcaatgattgggcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaattgaagg |
12572376 |
T |
|
| Q |
311 |
cag |
313 |
Q |
| |
|
||| |
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|
| T |
12572377 |
cag |
12572379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 13548543 - 13548843
Alignment:
| Q |
16 |
aatatccagcctaaaaaactgcaacaaaatatacttaaaattgaaccttaggatagctacaaacactgtgccaacctataaattataacnnnnnnnnnnn |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13548543 |
aatatccagcctaaaaaactgcaacaaaatatactcaaaattgaaccttaggatagctacaaacactgtgccaacctataaattataacaaaataaaaag |
13548642 |
T |
|
| Q |
116 |
nnnnnnnnnttgtgttagactaactttggggatgactctataaagac---ctgcataatttcaattttaaattt--aagatttataacaatgtaataaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| | |||||||||||||||||||||||| |
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| T |
13548643 |
acaaaaa--ttgtgttagactaactttggggatgattctataaagattctctgcataattttaattttaaatgtctaagatttataacaatgtaataaag |
13548740 |
T |
|
| Q |
211 |
taacaataaatttcactaaattgaatcaatgattgggcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaattgaagg |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13548741 |
taacaataaatttcactaaattgaatcaatgattgggcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaattgaagg |
13548840 |
T |
|
| Q |
311 |
cag |
313 |
Q |
| |
|
||| |
|
|
| T |
13548841 |
cag |
13548843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 19768306 - 19768234
Alignment:
| Q |
241 |
gattgggcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaattgaaggcag |
313 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||| ||| |||||||||||||| ||||| ||||||||||| |
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|
| T |
19768306 |
gattaggcaaagagtaaaattgaatgaacaaagcctatcgcacaaaatggctaaacagaaacattgaaggcag |
19768234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 125 - 313
Target Start/End: Complemental strand, 4351911 - 4351721
Alignment:
| Q |
125 |
ttgtgttagactaactttggggatgactctataaagacctgcataatttcaattttaaattt--aagatttataacaatgtaataaagtaacaataaatt |
222 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
4351911 |
ttgtgttagactaactttggggatgattctataaagacctgcataatttcaattttaaatgtctaagatttataacaatgtaataaagtaacaataaatt |
4351812 |
T |
|
| Q |
223 |
tcactaaattgaatcaatgattgggcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaattgaaggcag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
4351811 |
tcactaaattgaatcaatgattgggcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaatcgaaggcag |
4351721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 4351975 - 4351933
Alignment:
| Q |
62 |
cttaggatagctacaaacactgtgccaacctataaattataac |
104 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
4351975 |
cttagtatagctacaaacattgtgccaacctataacttataac |
4351933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 770817 - 770723
Alignment:
| Q |
125 |
ttgtgttagactaactttggggatgactctataaagacctgcataatttcaattttaaat--ttaagatttataacaatgtaataaagtaacaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| || ||||||||||| |||| |||| |||||||||| |
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|
| T |
770817 |
ttgtgttagactaactttggggatgattctatatagacctacataatttcaattttatatgcctaagatttatagcaatataatcaagtaacaat |
770723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 770906 - 770842
Alignment:
| Q |
37 |
caacaaaatatacttaaaattgaaccttaggatagctacaaacactgtgccaacctataaattat |
101 |
Q |
| |
|
|||||||| |||| |||||||||||||| || |||||||||| ||| ||| |||||||||||| |
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| T |
770906 |
caacaaaacatacacaaaattgaaccttattatggctacaaacattgtaccagcctataaattat |
770842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 51389237 - 51389330
Alignment:
| Q |
125 |
ttgtgttagactaactttggggatgactctataaagacctgcataatttcaattttaaat--ttaagatttataacaatgtaataaagtaacaat |
217 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||| |||||||||||||||| |||| |||||||||| |
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|
| T |
51389237 |
ttgtgttagactaactttggg-atgattctatactgacctacataatttcaattttaaatgcctaagatttataacaatataatcaagtaacaat |
51389330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 8028077 - 8028179
Alignment:
| Q |
125 |
ttgtgttagactaactttggggatgactctataaagacctgcataatttcaattttaaat--ttaagatttataacaatgtaataaagtaacaataaatt |
222 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| | |||| ||||||||||||||||||| |||||||||| ||| |||| |||||||||| || | |
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|
| T |
8028077 |
ttgtgttagactaactttgcggatgattctatata-acctacataatttcaattttaaatacccaagatttatagaaatataatcaagtaacaatcaaat |
8028175 |
T |
|
| Q |
223 |
tcac |
226 |
Q |
| |
|
|||| |
|
|
| T |
8028176 |
tcac |
8028179 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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