View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_low_25 (Length: 318)
Name: NF6487_low_25
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 35095736 - 35095881
Alignment:
| Q |
18 |
aatgcaacgtcggtgttttgaagagagtttttaaatttaaggagagaatctatgtcagaaatacaataagcaatgttgatgagattaatagaaaagaaga |
117 |
Q |
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| T |
35095736 |
aatgcaacgtcggtgttttgaagagagtttttaaatttaaggagagaatctatgtcagaaatacaataagcaatgttgatgagattaatagaaaagaaga |
35095835 |
T |
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| Q |
118 |
aagtgatgaagaatgatggtgccataataataaaatatagtgaagg |
163 |
Q |
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| T |
35095836 |
aagtgatgaagaatgatggtgccataataataaaatatagtgaagg |
35095881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 214 - 309
Target Start/End: Original strand, 35095932 - 35096027
Alignment:
| Q |
214 |
ttaaggtgcggcgtgcagcgatagaaggaagatgagatgttactgaggttgatcaagaacagcaatggaaggtggagagagatggaattgcatatt |
309 |
Q |
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| T |
35095932 |
ttaaggtgcggcgtgcagcgctagaaggaagatgagatgttactgaggttgatcaagaacagctatggaaggtggagagagatggaattgcatatt |
35096027 |
T |
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