View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6487_low_26 (Length: 315)
Name: NF6487_low_26
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 5439842 - 5439538
Alignment:
| Q |
1 |
ttcttacgtcccatatattttgttggctgacttgagaaattgtctaacctttcattgaccgggaagtttccttacctaaagttcaatcatctatttattg |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5439842 |
ttcttacgtcccatataccctcttggctgacttgagaaattgcctaacctttcattgaccgggaagtttccttgcctaaagttcaatcatctatttattg |
5439743 |
T |
|
| Q |
101 |
atgttggctaatatgatacttatttttaggtataaacaacaagtatttcacaaatttcaagtacttctaggtatttatggatatccaccaagaacannnn |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
5439742 |
atgttggctaatatgataattatttttaagtataaacaacaagtattccacaaatttcaagtacttgtaggtatttatggatatccaccgagaacatttt |
5439643 |
T |
|
| Q |
201 |
nnnnaaatgatttgtataatcctttatttatttacctaaaatttaagaagcaaattcatcacattatttcatctcaatttaacaacaatagatcatcaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5439642 |
ttttaaatgatttgtataatcctttatttatttacctaaaatttaagaagcgaattcatcacattatttcatctcaatttaacaacaatagatcatcaca |
5439543 |
T |
|
| Q |
301 |
ttcat |
305 |
Q |
| |
|
||||| |
|
|
| T |
5439542 |
ttcat |
5439538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 35066673 - 35066725
Alignment:
| Q |
66 |
gtttccttacctaaagttcaatcatctatttattgatgttggctaatatgata |
118 |
Q |
| |
|
||||||| |||||||||||||| ||||||| | |||||||||||| |||||| |
|
|
| T |
35066673 |
gtttcctcacctaaagttcaattgtctatttgtcgatgttggctaacatgata |
35066725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University