View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_low_28 (Length: 299)
Name: NF6487_low_28
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 28745427 - 28745715
Alignment:
| Q |
1 |
tcccgatggtgcatatttgggtacacagttttgtaaacaggtgatgacgtactcgatatgaccaacacacgttcgacgtcgtccgatcaagcctagtcgt |
100 |
Q |
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| T |
28745427 |
tcccgatggtgcatattggggtacacagttttgtaaacaggtgacgacgtactcaatatgaccaacacacgttcgaggtcgtccggtcaagcctagtcat |
28745526 |
T |
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| Q |
101 |
gtggtgtattattttttagtggcccaaagccgtaaattaattaattctttggaaattttgttttggtaacatcatcgttcagtgttttgcacgcgtcaac |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| |
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| T |
28745527 |
gtggtgtattattttttagtggtccaaagccgtaaattatttaattctttggaaattttgctttggtaacgtcatcgttcagggttttgcacgcgtcaac |
28745626 |
T |
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| Q |
201 |
atgcgtttggcacactccaataagtgctgaacacatgtttgtgcgcaccctcctctagtcaactcttgttcgcgttctctttgatgatg |
289 |
Q |
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| T |
28745627 |
acgcgtttggcacactccaatgagtgctgaacacatgtttgtgcgcaccctcctctagtcaactcttgttcgcgttctcttttatgatg |
28745715 |
T |
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