View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6487_low_30 (Length: 286)

Name: NF6487_low_30
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6487_low_30
NF6487_low_30
[»] chr6 (7 HSPs)
chr6 (1-286)||(28745664-28745948)
chr6 (47-126)||(34233387-34233466)
chr6 (25-127)||(34235083-34235186)
chr6 (87-129)||(24045342-24045384)
chr6 (87-127)||(19975747-19975787)
chr6 (87-127)||(24042027-24042067)
chr6 (88-126)||(19973347-19973385)
[»] chr1 (5 HSPs)
chr1 (26-126)||(4242965-4243066)
chr1 (87-127)||(38825907-38825947)
chr1 (86-123)||(21501770-21501807)
chr1 (87-127)||(49387988-49388028)
chr1 (87-127)||(49391276-49391316)
[»] chr7 (3 HSPs)
chr7 (26-127)||(31207035-31207137)
chr7 (26-126)||(31210426-31210527)
chr7 (87-127)||(13815404-13815444)
[»] chr2 (3 HSPs)
chr2 (26-127)||(32424597-32424699)
chr2 (26-126)||(27106930-27107030)
chr2 (26-126)||(30750121-30750221)
[»] scaffold0028 (2 HSPs)
scaffold0028 (26-126)||(109748-109848)
scaffold0028 (26-127)||(127329-127430)
[»] chr4 (3 HSPs)
chr4 (26-121)||(44643064-44643160)
chr4 (26-126)||(4746799-4746900)
chr4 (86-126)||(895095-895135)
[»] chr3 (2 HSPs)
chr3 (86-127)||(16356966-16357007)
chr3 (86-127)||(16366789-16366830)
[»] scaffold0002 (1 HSPs)
scaffold0002 (40-128)||(448344-448431)


Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 28745948 - 28745664
Alignment:
Q  1 tttgaaaaactataacggttaaggttttgactaagtatacaacatatggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28745948 tttgaaaaactataacggttaaggttttgactaagtatacaacatatggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaa 28745849  T
Q  101 taaaatacaactttaaaattacaacaaaaatttgctagttgttgagatgcgctatttataggtgaggaggtaatcgattacaaaaccaatgactaatatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  28745848 taaaatacaactttaaaattacaacaaaaatttgctagttgttgagatgtgctatttataggcgaggaggtaatcgattacaaaaccaatgactaaaatc 28745749  T
Q  201 atttggtcattacaaaatcaacggcatgatcttgcatcataaaagagaacgcgaacaagagttgcctagaggagggtgcgcacaaa 286  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28745748 atttggtcattacaaaatcgacgacat-atcttgcatcataaaagagaacgcgaacaagagttgactagaggagggtgcgcacaaa 28745664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 34233466 - 34233387
Alignment:
Q  47 tggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaataaaatacaactttaaaattacaaca 126  Q
    ||||||||| ||||||  |||||||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  34233466 tggtcaaaataatagttaagtaaaataaagcttatttttaattaacttttgaaataaaataaaactttaaaattacaaca 34233387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 34235186 - 34235083
Alignment:
Q  25 ttttgactaagtatac-aacatatggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaataaaatacaactttaaaattaca 123  Q
    |||||||||||||||  ||||| ||||||||| ||||||  | |||||||| ||||||||  ||||||||| |||||||| ||| |||||||||||||||    
T  34235186 ttttgactaagtatattaacatgtggtcaaaataatagttaaataaaataaagcttatttttaattaacttctgaaataatataaaactttaaaattaca 34235087  T
Q  124 acaa 127  Q
    ||||    
T  34235086 acaa 34235083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 24045342 - 24045384
Alignment:
Q  87 attaacttttgaaataaaatacaactttaaaattacaacaaaa 129  Q
    ||||||||||||||||||||| |||| ||||||||||||||||    
T  24045342 attaacttttgaaataaaataaaactctaaaattacaacaaaa 24045384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 19975787 - 19975747
Alignment:
Q  87 attaacttttgaaataaaatacaactttaaaattacaacaa 127  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  19975787 attaacttttgaaataaaataaaaccttaaaattacaacaa 19975747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 24042027 - 24042067
Alignment:
Q  87 attaacttttgaaataaaatacaactttaaaattacaacaa 127  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  24042027 attaacttttgaaataaaataaaactctaaaattacaacaa 24042067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 19973385 - 19973347
Alignment:
Q  88 ttaacttttgaaataaaatacaactttaaaattacaaca 126  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  19973385 ttaacttttgaaataaaataaaaccttaaaattacaaca 19973347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 4242965 - 4243066
Alignment:
Q  26 tttgactaagtata-caacatatggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaataaaatacaactttaaaattacaa 124  Q
    |||||||||||||| |||||| ||||||||| |||| |  ||||||||||  | |||||  |||||||||||||||||||||| ||||||||||||||||    
T  4242965 tttgactaagtatatcaacatgtggtcaaaataataatttagtaaaataaaacatatttctaattaacttttgaaataaaataaaactttaaaattacaa 4243064  T
Q  125 ca 126  Q
    ||    
T  4243065 ca 4243066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 38825907 - 38825947
Alignment:
Q  87 attaacttttgaaataaaatacaactttaaaattacaacaa 127  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  38825907 attaacttttgaaataaaataaaactttaaaattacaacaa 38825947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 21501770 - 21501807
Alignment:
Q  86 aattaacttttgaaataaaatacaactttaaaattaca 123  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  21501770 aattaacttttgaaataaaataaaactctaaaattaca 21501807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 49387988 - 49388028
Alignment:
Q  87 attaacttttgaaataaaatacaactttaaaattacaacaa 127  Q
    ||||||||||||||||||||| |||| |||||||| |||||    
T  49387988 attaacttttgaaataaaataaaactctaaaattaaaacaa 49388028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 49391276 - 49391316
Alignment:
Q  87 attaacttttgaaataaaatacaactttaaaattacaacaa 127  Q
    ||||||||||||||||||||| || | ||||||||||||||    
T  49391276 attaacttttgaaataaaataaaattctaaaattacaacaa 49391316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 31207035 - 31207137
Alignment:
Q  26 tttgactaagtata-caacatatggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaataaaatacaactttaaaattacaa 124  Q
    |||||||||||||| |||||| ||||||||| ||| ||  ||||||||||  | |||||  |||||||||||||||||||||| |||| |||||||| ||    
T  31207035 tttgactaagtatatcaacatgtggtcaaaataattgtttagtaaaataaaacatatttctaattaacttttgaaataaaataaaactctaaaattataa 31207134  T
Q  125 caa 127  Q
    |||    
T  31207135 caa 31207137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 31210426 - 31210527
Alignment:
Q  26 tttgactaagtata-caacatatggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaataaaatacaactttaaaattacaa 124  Q
    |||||||||||||| ||||||||| |||||| ||| ||  | ||||||||  | |||||  |||||||||||||||||||||| |||| |||||||| ||    
T  31210426 tttgactaagtatatcaacatatgatcaaaataattgtttaataaaataaaacatatttttaattaacttttgaaataaaataaaactctaaaattataa 31210525  T
Q  125 ca 126  Q
    ||    
T  31210526 ca 31210527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 13815444 - 13815404
Alignment:
Q  87 attaacttttgaaataaaatacaactttaaaattacaacaa 127  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  13815444 attaacttttgaaataaaataaaactctaaaattacaacaa 13815404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 32424699 - 32424597
Alignment:
Q  26 tttgactaagtata-caacatatggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaataaaatacaactttaaaattacaa 124  Q
    |||||||||||||| ||||||  |||||||| ||||||  ||||||||||  | |||||  ||||||||||| |||||||||| |||| |||||||||||    
T  32424699 tttgactaagtatatcaacatgcggtcaaaataatagtttagtaaaataaaacatatttctaattaacttttaaaataaaataaaactctaaaattacaa 32424600  T
Q  125 caa 127  Q
    |||    
T  32424599 caa 32424597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 27107030 - 27106930
Alignment:
Q  26 tttgactaagtata-caacatatggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaataaaatacaactttaaaattacaa 124  Q
    |||||||||||||| |||||| ||||||||| ||||||  ||||||||||  | |||||  ||||||||||| |||||||||| ||| | ||||||||||    
T  27107030 tttgactaagtatatcaacatgtggtcaaaataatagtttagtaaaataaaacatatttttaattaacttttaaaataaaataaaac-tcaaaattacaa 27106932  T
Q  125 ca 126  Q
    ||    
T  27106931 ca 27106930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 30750121 - 30750221
Alignment:
Q  26 tttgactaagtata-caacatatggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaataaaatacaactttaaaattacaa 124  Q
    ||||| |||||||| |||| | ||||||||| ||||||  |||||||||| || ||||| |    |||||||||||||||||| |||| |||||||||||    
T  30750121 tttgattaagtatatcaacgtgtggtcaaaataatagtttagtaaaataaagcatattttctgg-aacttttgaaataaaataaaactctaaaattacaa 30750219  T
Q  125 ca 126  Q
    ||    
T  30750220 ca 30750221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 109848 - 109748
Alignment:
Q  26 tttgactaagtata-caacatatggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaataaaatacaactttaaaattacaa 124  Q
    |||||||||||||| |||||| ||||||||| ||||||  ||||||||||  | |||||  |||||||||||||||||||||| ||| | ||||||||||    
T  109848 tttgactaagtatatcaacatgtggtcaaaataatagtttagtaaaataaaacatatttctaattaacttttgaaataaaataaaac-tcaaaattacaa 109750  T
Q  125 ca 126  Q
    ||    
T  109749 ca 109748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 127430 - 127329
Alignment:
Q  26 tttgactaagtata-caacatatggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaataaaatacaactttaaaattacaa 124  Q
    |||||||||| ||| |||||| ||||||||| ||||||  ||||||||||  | |||||  |||||||||||||||||||||| ||| | ||||||||||    
T  127430 tttgactaagaatatcaacatgtggtcaaaataatagtttagtaaaataaaacatatttctaattaacttttgaaataaaataaaac-tcaaaattacaa 127332  T
Q  125 caa 127  Q
    |||    
T  127331 caa 127329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 44643160 - 44643064
Alignment:
Q  26 tttgactaagtata-caacatatggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaataaaatacaactttaaaatta 121  Q
    |||||||||||||| |||||| |||| |||| ||||||  ||||||||||  | |||||  |||||||||||||||||||||| |||| ||||||||    
T  44643160 tttgactaagtatatcaacatgtggttaaaataatagtttagtaaaataaaacatatttttaattaacttttgaaataaaataaaactctaaaatta 44643064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 4746900 - 4746799
Alignment:
Q  26 tttgactaagtata-caacatatggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaataaaatacaactttaaaattacaa 124  Q
    |||||||||||||| |||||| ||||||||| ||||||  |||||| | |  | | |||  |||||||||||||||||||||| |||| |||||||||||    
T  4746900 tttgactaagtatatcaacatgtggtcaaaataatagtttagtaaagttaatcatgtttctaattaacttttgaaataaaataaaactctaaaattacaa 4746801  T
Q  125 ca 126  Q
    ||    
T  4746800 ca 4746799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 895135 - 895095
Alignment:
Q  86 aattaacttttgaaataaaatacaactttaaaattacaaca 126  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  895135 aattaacttttgaaataaaataaaactctaaaattacaaca 895095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 16356966 - 16357007
Alignment:
Q  86 aattaacttttgaaataaaatacaactttaaaattacaacaa 127  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  16356966 aattaacttttgaaataaaataaaactataaaattacaacaa 16357007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 16366789 - 16366830
Alignment:
Q  86 aattaacttttgaaataaaatacaactttaaaattacaacaa 127  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  16366789 aattaacttttgaaataaaataaaactctaaaattacaacaa 16366830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 448431 - 448344
Alignment:
Q  40 caacatatggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaataaaatacaactttaaaattacaacaaa 128  Q
    |||||| ||||||||| || |||  | |||||||| || |||||  |||||||||||||||| ||||| |||| |||||||||||||||    
T  448431 caacatgtggtcaaaataacagtttattaaaataaagcatatttttaattaacttttgaaat-aaatagaactctaaaattacaacaaa 448344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University