View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6487_low_31 (Length: 269)

Name: NF6487_low_31
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6487_low_31
NF6487_low_31
[»] chr7 (16 HSPs)
chr7 (1-253)||(20230079-20230331)
chr7 (1-246)||(20242029-20242274)
chr7 (1-242)||(20302240-20302481)
chr7 (16-244)||(20169464-20169692)
chr7 (1-245)||(20272231-20272475)
chr7 (1-246)||(20262662-20262892)
chr7 (1-242)||(20293038-20293279)
chr7 (1-137)||(20064030-20064166)
chr7 (1-242)||(20300167-20300408)
chr7 (7-235)||(20287673-20287904)
chr7 (1-246)||(20277975-20278220)
chr7 (171-242)||(20090474-20090545)
chr7 (1-47)||(20282553-20282599)
chr7 (1-108)||(19937429-19937536)
chr7 (1-108)||(19968568-19968675)
chr7 (179-235)||(20063947-20064003)
[»] chr4 (2 HSPs)
chr4 (1-235)||(40825237-40825471)
chr4 (1-206)||(40820598-40820803)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 20230079 - 20230331
Alignment:
1 gtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20230079 gtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagga 20230178  T
101 atggaatagaaacaactggactggcgggtgtgttaggcggaaaccattgcagtgtaaaaggatcagcaataaaaccacaagtagaaaggaagacgggttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
20230179 atggaatagaaacaactggactggcgggtgtgttaggcggaaaccattgcagtgtaaaaggatcggcaataaaaccacaggtagaaaggaagacgggttt 20230278  T
201 ttgaaactacagatggttaaagttccagattttgctgaaggtttagaagggac 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
20230279 ttgaaactacagatggttaaagttccagattttgctgaaggtttagaagggac 20230331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 20242029 - 20242274
Alignment:
1 gtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagga 100  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||||| | ||| ||||||| ||||||||||| ||||| ||    || |  |  ||    
20242029 gtgatgtttatggtctatgtggagattttacaagctgtaattcattgagctcaccagtttgcagttgtttgaaaggatttgaacccagaaatactcgtga 20242128  T
101 atggaatagaaacaactggactggcgggtgtgttaggcggaaaccattgcagtgtaaaaggatcagcaataaaaccacaagtagaaaggaagacgggttt 200  Q
    ||||| |||||||||||||||||||||||||||||||| || ||| |||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||    
20242129 atggagtagaaacaactggactggcgggtgtgttaggcagagacctttgctgtgtaaaagggtcaccaataaaaccacaagtagaaaggaagatgggttt 20242228  T
201 ttgaaactacagatggttaaagttccagattttgctgaaggtttag 246  Q
     |||||||||||||||||||||||||||||||||||||||||||||    
20242229 ctgaaactacagatggttaaagttccagattttgctgaaggtttag 20242274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 20302240 - 20302481
Alignment:
1 gtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagga 100  Q
    |||||||||||||| | || ||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||    
20302240 gtgatgtttatggtatttgcggggcatttgcaatttgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccaatcaacatacagga 20302339  T
101 atggaatagaaacaactggactggcgggtgtgttaggcggaaaccattgcagtgtaaaaggatcagcaataaaaccacaagtagaaaggaagacgggttt 200  Q
    ||||||||||||||| |||||| | |||||||||||| | | | | ||||||||| ||||| ||| ||||||||||||||||| ||| ||||| ||||||    
20302340 atggaatagaaacaattggactagtgggtgtgttaggagaagatctttgcagtgtgaaagggtcaacaataaaaccacaagtacaaaagaagatgggttt 20302439  T
201 ttgaaactacagatggttaaagttccagattttgctgaaggt 242  Q
    |||||| | ||||||||||||||||| |||||||| ||||||    
20302440 ttgaaattgcagatggttaaagttcccgattttgcagaaggt 20302481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 20169692 - 20169464
Alignment:
16 tatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacaggaatggaatagaaacaa 115  Q
    |||||||||||||| |||| ||||||||||||||| | ||||  || |||||||||| ||||||||| ||    |||||| |  ||||||||| | | ||    
20169692 tatgtggggcatttgcaagttgtaattcattgagctcaccaacatgtagctgtttgagagggtttgaacccagaaacatagaacaatggaatatacataa 20169593  T
116 ctggactggcgggtgtgttaggcggaaaccattgcagtgtaaaaggatcagcaataaaaccacaagtagaaaggaagacgggtttttgaaactacagatg 215  Q
    |||||| || ||||||||| |  ||| ||| ||||||||| ||||| ||| ||||||||||||||||| ||||||||| ||||||||||||||||| |||    
20169592 ctggaccggtgggtgtgttcgaaggacacctttgcagtgtgaaagggtcaacaataaaaccacaagtacaaaggaagatgggtttttgaaactacaaatg 20169493  T
216 gttaaagttccagattttgctgaaggttt 244  Q
     ||||||||||||||||||||||||||||    
20169492 attaaagttccagattttgctgaaggttt 20169464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 20272231 - 20272475
Alignment:
1 gtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagga 100  Q
    |||||||||||||| ||||||| |||||| ||| ||||| ||||| || | | ||||| ||||||||| ||||||| ||||| ||    || ||||  ||    
20272231 gtgatgtttatggtatatgtggcgcatttgcaatctgtagttcatcgacctcaccaatatgcagctgtctgaaaggatttgaacctaaaaatatacgtga 20272330  T
101 atggaatagaaacaactggactggcgggtgtgttaggcggaaaccattgcagtgtaaaaggatcagcaataaaaccacaagtagaaaggaagacgggttt 200  Q
    |||||| | |||||||||| |||| ||||||||||||  || ||| ||||||||  ||||| ||  ||||||||||||||||| ||||||||| ||| ||    
20272331 atggaaaataaacaactggtctggtgggtgtgttaggaagacacctttgcagtgcgaaagggtccacaataaaaccacaagtacaaaggaagatgggatt 20272430  T
201 ttgaaactacagatggttaaagttccagattttgctgaaggttta 245  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
20272431 ttgaaactacagacgattaaagttccagattttgctgaaggttta 20272475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 20262662 - 20262892
Alignment:
1 gtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagga 100  Q
    |||||||||||||||| ||||| | ||||||||||||||||||||||||| | ||  | ||||| ||||||||||| ||||| ||    || |  |  ||    
20262662 gtgatgtttatggtctctgtggagaatttacaagctgtaattcattgagctcaccggtatgcagttgtttgaaaggatttgaacccagaaatactcgtga 20262761  T
101 atggaatagaaacaactggactggcgggtgtgttaggcggaaaccattgcagtgtaaaaggatcagcaataaaaccacaagtagaaaggaagacgggttt 200  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| |||               ||||||    
20262762 atggagtagaaacaactggactggcgggtgtgttaggcggagacctttgcagtgtgaaaggatcagcaataaaactaca---------------gggttt 20262846  T
201 ttgaaactacagatggttaaagttccagattttgctgaaggtttag 246  Q
    || |||||||||||||||||||||||||||||||||||||||||||    
20262847 ttcaaactacagatggttaaagttccagattttgctgaaggtttag 20262892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 20293038 - 20293279
Alignment:
1 gtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagga 100  Q
    |||||||||||||| |||||||||| ||| ||||||||| |||||||||| | ||||| || |||||||||| ||| ||||  ||    |||||| | ||    
20293038 gtgatgtttatggtatatgtggggcctttgcaagctgtagttcattgagctcaccaatatgtagctgtttgagaggatttgtacccagaaacatagaaga 20293137  T
101 atggaatagaaacaactggactggcgggtgtgttaggcggaaaccattgcagtgtaaaaggatcagcaataaaaccacaagtagaaaggaagacgggttt 200  Q
    ||||| || | | || ||||| || |||||||||||| ||| ||| ||| ||||| ||||| ||| |||||||||||| |||| ||||||||| ||||||    
20293138 atggagtaaacataattggaccggtgggtgtgttaggaggacacctttggagtgtgaaagggtcaacaataaaaccaccagtacaaaggaagatgggttt 20293237  T
201 ttgaaactacagatggttaaagttccagattttgctgaaggt 242  Q
    |||||| |  ||||||||||||||||||||||||| ||||||    
20293238 ttgaaattgaagatggttaaagttccagattttgcagaaggt 20293279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 20064166 - 20064030
Alignment:
1 gtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagga 100  Q
    ||||||| ||||||  ||||||||||||| ||||||||| |||||||| ||| ||||| ||||||||||||||||| ||||| ||   || |||||||||    
20064166 gtgatgtatatggtacatgtggggcatttgcaagctgtagttcattgaacacaccaatatgcagctgtttgaaaggatttgaacctaggagcatacagga 20064067  T
101 atggaatagaaacaactggactggcgggtgtgttagg 137  Q
    ||||||||||||||||||||| || ||||||||||||    
20064066 atggaatagaaacaactggacaggtgggtgtgttagg 20064030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 20300167 - 20300408
Alignment:
1 gtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagga 100  Q
    |||||| ||||||| |||| |||| |||| ||||||||| |||| | ||  | |||||||||| |||||||||||  ||||| ||   |   ||||| ||    
20300167 gtgatggttatggtatatgcggggtatttgcaagctgtagttcactaagttcaccaatttgcacctgtttgaaagaatttgaacccaagtcgatacaaga 20300266  T
101 atggaatagaaacaactggactggcgggtgtgttaggcggaaaccattgcagtgtaaaaggatcagcaataaaaccacaagtagaaaggaagacgggttt 200  Q
    ||||||||||||||| |||||||| |||||||| ||| ||| | | || |||||| ||||| ||| |||||||||||| |||| ||||||||| || |||    
20300267 atggaatagaaacaattggactggtgggtgtgtcaggaggacagcttttcagtgttaaagggtcaacaataaaaccaccagtacaaaggaagatggattt 20300366  T
201 ttgaaactacagatggttaaagttccagattttgctgaaggt 242  Q
    |||| | | ||||||||||||||||| || ||||| ||||||    
20300367 ttgatattgcagatggttaaagttcctgaatttgcagaaggt 20300408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 20287673 - 20287904
Alignment:
7 tttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacaggaatggaa 106  Q
    |||||||| |||||||||||||  ||||||||| ||||||||     ||||| ||||| ||||||| ||| ||||| ||   ||||| |||||| |||||    
20287673 tttatggtatatgtggggcattcgcaagctgtagttcattgaagttaccaatatgcagttgtttgagaggatttgaacccaggaacaaacaggagtggaa 20287772  T
107 tagaaacaactggactggcgggtgtgttaggcggaaaccattgcagtgtaaaaggatcagcaataaaaccacaagtaga---aaggaagacgggtttttg 203  Q
    |||| ||||||||||||| |||||||||||  ||| ||  ||||||||| ||||| |||  ||||| |||||||||| |   |||||||| || ||||||    
20287773 tagacacaactggactggtgggtgtgttagaaggatacttttgcagtgtgaaagggtcaataataacaccacaagtacaaagaaggaagatggatttttg 20287872  T
204 aaactacagatggttaaagttccagattttgc 235  Q
    ||| |  |||||||||||||||| ||||||||    
20287873 aaattgaagatggttaaagttcctgattttgc 20287904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 20277975 - 20278220
Alignment:
1 gtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagga 100  Q
    |||||||||| ||| |||||||||||||| ||||||||| |||||||  | | ||||| || | |||| ||| ||| ||||| ||    |||||||| ||    
20277975 gtgatgtttacggtatatgtggggcatttgcaagctgtagttcattgttctcaccaatatgtatctgtctgagaggatttgaacctagaaacatacaaga 20278074  T
101 atggaatagaaacaactggactggcgggtgtgttaggcggaaaccattgcagtgtaaaaggatcagcaataaaaccacaagtagaaaggaagacgggttt 200  Q
    ||||||| || | |||||||| || |||||||||||| | |   | ||||||||||  |||   | ||||||||||||| | ||||||||||| | ||||    
20278075 atggaatggacataactggaccggtgggtgtgttaggagaaccactttgcagtgtagtagggataacaataaaaccacacggagaaaggaagatgcgttt 20278174  T
201 ttgaaactacagatggttaaagttccagattttgctgaaggtttag 246  Q
    |||||| |||||| ||| ||||| |||| ||||||||||| |||||    
20278175 ttgaaattacagacggtgaaagtaccagcttttgctgaagctttag 20278220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 20090545 - 20090474
Alignment:
171 aaaaccacaagtagaaaggaagacgggtttttgaaactacagatggttaaagttccagattttgctgaaggt 242  Q
    |||||||||| || ||||||||| |||||||||||| |  ||||||||||||||||||||||||| ||||||    
20090545 aaaaccacaaatacaaaggaagatgggtttttgaaattgaagatggttaaagttccagattttgcagaaggt 20090474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20282553 - 20282599
Alignment:
1 gtgatgtttatggtctatgtggggcatttacaagctgtaattcattg 47  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||||    
20282553 gtgatgcttatggtatatgtggggcatttgcaagctgtaattcattg 20282599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 19937429 - 19937536
Alignment:
1 gtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagga 100  Q
    |||||||||||||| |||||||    ||| ||||||||||||||   ||| | ||||| || |||||||||||||||||||| ||   ||||| | ||||    
19937429 gtgatgtttatggtgtatgtggacattttgcaagctgtaattcacaaagctcaccaatatgtagctgtttgaaagggtttgagccaaggaacaaagagga 19937528  T
101 atggaata 108  Q
    ||||||||    
19937529 atggaata 19937536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 19968568 - 19968675
Alignment:
1 gtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagga 100  Q
    |||||||||||||| |||||||    ||| ||||||||||||||   ||| | ||||| || |||||||||||||||||||| ||   ||||| | ||||    
19968568 gtgatgtttatggtgtatgtggacattttgcaagctgtaattcacaaagctcaccaatatgtagctgtttgaaagggtttgagccaaggaacaaagagga 19968667  T
101 atggaata 108  Q
    ||||||||    
19968668 atggaata 19968675  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 20064003 - 20063947
Alignment:
179 aagtagaaaggaagacgggtttttgaaactacagatggttaaagttccagattttgc 235  Q
    ||||| ||| ||||| |||||||||||| |  |||||||||||||||| ||||||||    
20064003 aagtacaaaagaagatgggtttttgaaattgaagatggttaaagttcctgattttgc 20063947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 40825471 - 40825237
Alignment:
1 gtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagga 100  Q
    |||| ||||||||| |||||||||||||| ||||||||| ||||||||     || || ||||| ||||||| ||| ||||| ||   ||||| ||||||    
40825471 gtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttaccgatatgcagttgtttgagaggatttgaacccaggaacaaacagga 40825372  T
101 atggaatagaaacaactggactggcgggtgtgttaggcggaaaccattgcagtgtaaaaggatcagcaataaaaccacaagtagaaaggaagacgggttt 200  Q
     ||||||||| |||||||||| || |||||||||||  ||| ||  ||||||||| ||| | |||  ||||| || ||||||| ||||||||| ||||||    
40825371 gtggaatagacacaactggacaggtgggtgtgttagaaggacacttttgcagtgtgaaaaggtcaataataagacaacaagtacaaaggaagatgggttt 40825272  T
201 ttgaaactacagatggttaaagttccagattttgc 235  Q
    |||||| | ||||||||||||||||| ||||||||    
40825271 ttgaaattgcagatggttaaagttcctgattttgc 40825237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 40820803 - 40820598
Alignment:
1 gtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagga 100  Q
    |||||||||||||| ||||||  |||||| ||||||||| || ||||||| ||||||| || |||||||| | ||| ||||  ||    |||||| | ||    
40820803 gtgatgtttatggtatatgtgcagcatttgcaagctgtagtttattgagctcgccaatatgtagctgttttagaggatttgtacccagaaacatagaaga 40820704  T
101 atggaatagaaacaactggactggcgggtgtgttaggcggaaaccattgcagtgtaaaaggatcagcaataaaaccacaagtagaaaggaagacgggttt 200  Q
    ||||| || | | || ||||| ||  ||||||||||| ||| ||| ||| ||||| |||||||||||||||||||||| |||| ||||||| | ||||||    
40820703 atggagtatacataattggacgggtcggtgtgttaggaggacacctttggagtgtgaaaggatcagcaataaaaccacgagtacaaaggaaaatgggttt 40820604  T
201 ttgaaa 206  Q
    ||||||    
40820603 ttgaaa 40820598  T

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