View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_low_38 (Length: 249)
Name: NF6487_low_38
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 18092743 - 18092523
Alignment:
| Q |
10 |
acatcatcattcccaatagaaccagtaccttccctcatcttcaacctttccccaacaaatctcctaaaaatactcaaaaccttcttaacagaaacaacag |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
18092743 |
acatcatcattcccaatagaaccagtaccttccctcatcttcaacctttccccaacaaaactcctaaatatactcaaaaccttcttaacagaaacaacag |
18092644 |
T |
|
| Q |
110 |
aacgccttctaataccttgcaaatcaaaaaccttcaacataggnnnnnnntccgacaaattcggtgctccaacttccttcaatatactcacaacaatctc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18092643 |
aacgccttctaataccttgcaaatcaaaaaccttcaacataggaaaaaaatccgacaaattcggtgctccaacttccttcaatatactcacaacaatctc |
18092544 |
T |
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| Q |
210 |
cttatactctccagcttcctc |
230 |
Q |
| |
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||||||||||||||||||||| |
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| T |
18092543 |
cttatactctccagcttcctc |
18092523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 18102887 - 18102667
Alignment:
| Q |
10 |
acatcatcattcccaatagaaccagtaccttccctcatcttcaacctttccccaacaaatctcctaaaaatactcaaaaccttcttaacagaaacaacag |
109 |
Q |
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|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
18102887 |
acatcaccattcccaatagaaccagtaccttccctcatcttcaacctttccccaacaaatctcctaaatatactcaaaaccttcttaacagaaataacag |
18102788 |
T |
|
| Q |
110 |
aacgccttctaataccttgcaaatcaaaaaccttcaacataggnnnnnnntccgacaaattcggtgctccaacttccttcaatatactcacaacaatctc |
209 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18102787 |
aacgccttctaataccttgcaaatcaaaaatcttcagcataggaaaaaaatctgacaaattcggtgctccaacttccttcaatatactcacaacaatctc |
18102688 |
T |
|
| Q |
210 |
cttatactctccagcttcctc |
230 |
Q |
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||||||||||||||||||||| |
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| T |
18102687 |
cttatactctccagcttcctc |
18102667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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