View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_low_43 (Length: 236)
Name: NF6487_low_43
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8976068 - 8975826
Alignment:
| Q |
1 |
acctatggatctggtatgctatatattcacaacctatgattgttaatatttttcttttaaaaactcgatatccgattcaaaaactgacgaagccgattga |
100 |
Q |
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| T |
8976068 |
acctatggatctggtatgctatatattcacaacctatgattattaatatttttcttttaaaaactcgatatccgattcaaaaactgacgaagccgattga |
8975969 |
T |
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| Q |
101 |
tattttctttaaagtagtaataccatgcatgc--tataagtactatatttttg-------------------atgttgtagatgtgcagccagcagactc |
179 |
Q |
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| T |
8975968 |
tattttctttaaagtagtaataccatgcatgctatataagtactatatttttgataattttaacaatttataatgttgtagatgtgcagccagcagactc |
8975869 |
T |
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| Q |
180 |
tgaaattaaattttgtctcagagaaattataagagatggaaat |
222 |
Q |
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| T |
8975868 |
tgaaacaaaattttgtctcagagaaattataagagatggaaat |
8975826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 8940785 - 8940879
Alignment:
| Q |
58 |
taaaaactcgatatccgattcaaaaactgacgaagccgattgatattttctttaaagtagtaataccatgcatgctataagtactatatttttgat |
153 |
Q |
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| T |
8940785 |
taaaaactcggtatccgatataaagaccgacgaatttgattgatattatctttaaagtagtagtacgatgcatgcaataagtact-tatttttgat |
8940879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 8992103 - 8992047
Alignment:
| Q |
152 |
atgttgtagatgtgcagccagcagactctgaaattaaattttgtctcagagaaatta |
208 |
Q |
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| T |
8992103 |
atgttgtagatgtgcagccagcagagactgtaactaaatattgtctcaaagagatta |
8992047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 9016550 - 9016494
Alignment:
| Q |
152 |
atgttgtagatgtgcagccagcagactctgaaattaaattttgtctcagagaaatta |
208 |
Q |
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| T |
9016550 |
atgttgtagatgtgcagccagcagagactgtaactaaatattgtctcaaagagatta |
9016494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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