View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_low_44 (Length: 233)
Name: NF6487_low_44
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 29103322 - 29103539
Alignment:
| Q |
1 |
catcgatagactctattatttttagtaaatttaatgaaagagaaatttttatcgatccattgatagagaataaaatgtttgattgnnnnnnnttgtgatt |
100 |
Q |
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| T |
29103322 |
catcgatagact--attatttttagtaaatttaatgaaagagaaatttttatcgatccatcgatagagaataaaatgtttgattgaaaaaaattttgatt |
29103419 |
T |
|
| Q |
101 |
tcaggatgcatatgctctttgccgtatattcaagaagagtacagtgattgctccaaaagttggggagcaatatgttaataatgttgccaggcatgcaaat |
200 |
Q |
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| T |
29103420 |
tcaggatgcatatgctctttgccgtatattcaagaagagtacagtgattgctccaaaaattggggagcaatatgttaataatgttgccaggcatgcaaat |
29103519 |
T |
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| Q |
201 |
catattacaagtgatcaatc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
29103520 |
catattacaagtgatcaatc |
29103539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 32789356 - 32789277
Alignment:
| Q |
101 |
tcaggatgcatatgctctttgccgtatattcaagaagagtacagtgattgctccaaaagttggggagcaatatgttaata |
180 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| | ||||||| ||||| |
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| T |
32789356 |
tcaggatgcatatgctctttgccgtgtgatcaagaagagtacagtgattgtgccaaaagttggaggacaatatggtaata |
32789277 |
T |
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