View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6487_low_45 (Length: 220)
Name: NF6487_low_45
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6487_low_45 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 41344272 - 41344049
Alignment:
| Q |
1 |
atgtgcctaaataaatctgaaaaagatttattaaggactcattgttccgtaagttgtaaagaggtatatgcat----tcannnnnnngtgggttatgatt |
96 |
Q |
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| T |
41344272 |
atgtgcctaaataaatctgaaaaagatttattaaggactcattgttccgtaagttgtaaagaggtatatgcatgcattcatttttttgtgggttttgatt |
41344173 |
T |
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| Q |
97 |
tgtacatcgaatatgaaaatcacatgatattaacttagaattttgactatatgctttttgaaagattgatgagaaattgaagggctcaatcggaatccaa |
196 |
Q |
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| T |
41344172 |
tgtacatcgaatatgaaaatcacatgatattaacttagaattttgactatatgctttttgaaagattgatgagaaattgaagggctcaatcggaatccaa |
41344073 |
T |
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| Q |
197 |
aataatatcaatgggaatgagagc |
220 |
Q |
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|||||||||||||||||||||||| |
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| T |
41344072 |
aataatatcaatgggaatgagagc |
41344049 |
T |
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