View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6487_low_46 (Length: 217)

Name: NF6487_low_46
Description: NF6487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6487_low_46
NF6487_low_46
[»] chr5 (5 HSPs)
chr5 (36-144)||(10142739-10142846)
chr5 (94-144)||(26637586-26637636)
chr5 (94-144)||(36896689-36896739)
chr5 (91-144)||(574153-574206)
chr5 (83-144)||(10142274-10142335)
[»] chr1 (7 HSPs)
chr1 (94-144)||(32708963-32709013)
chr1 (94-144)||(12458407-12458457)
chr1 (66-108)||(32212083-32212125)
chr1 (94-144)||(46835184-46835234)
chr1 (91-144)||(36018009-36018062)
chr1 (94-144)||(26213976-26214026)
chr1 (94-144)||(27787415-27787465)
[»] chr6 (4 HSPs)
chr6 (94-144)||(33483532-33483582)
chr6 (98-144)||(20240119-20240165)
chr6 (98-144)||(22134103-22134149)
chr6 (98-144)||(22141456-22141502)
[»] chr2 (4 HSPs)
chr2 (94-144)||(10862971-10863021)
chr2 (94-144)||(9792237-9792287)
chr2 (91-144)||(13293837-13293889)
chr2 (94-144)||(36911310-36911360)
[»] chr4 (2 HSPs)
chr4 (69-110)||(5814912-5814953)
chr4 (94-144)||(42885000-42885050)
[»] chr7 (2 HSPs)
chr7 (66-137)||(43439627-43439695)
chr7 (94-144)||(9158773-9158823)
[»] scaffold0538 (2 HSPs)
scaffold0538 (94-144)||(4016-4066)
scaffold0538 (94-144)||(8481-8531)
[»] scaffold0002 (1 HSPs)
scaffold0002 (98-144)||(452889-452935)
[»] chr8 (1 HSPs)
chr8 (94-144)||(30806004-30806054)
[»] chr3 (1 HSPs)
chr3 (96-144)||(27065322-27065370)


Alignment Details
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 10142739 - 10142846
Alignment:
Q  36 tattgttgtgtttatttagnnnnnnnnncaatgtttacaattgtttatttgaaacataaaagtgggtgtaaattagtgaggtatgtgcaaacaatttgat 135  Q
    |||||||||||||||||||         |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10142739 tattgttgtgtttatttagtttttttttcaatgtttacaattgtttatttgaaacataaa-gtgggtgtaaattagtgaggtatgtgcaaacaatttgat 10142837  T
Q  136 aaaatttat 144  Q
    |||| ||||    
T  10142838 aaaacttat 10142846  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 26637586 - 26637636
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||||||||||||||||||||  ||| |||||||||| ||||||||||    
T  26637586 aaagtgggtgtaaattagtgaggtgagtgtaaacaatttgttaaaatttat 26637636  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 36896739 - 36896689
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||| |||||||||||||||   ||| |||||||||||||||||||||    
T  36896739 aaagtggatgtaaattagtgaggagggtgtaaacaatttgataaaatttat 36896689  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 574153 - 574206
Alignment:
Q  91 ataaaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    |||||||||| ||||||||||||||||| |||  ||||||||| ||||| ||||    
T  574153 ataaaagtggatgtaaattagtgaggtaggtgtgaacaatttgttaaaacttat 574206  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 10142335 - 10142274
Alignment:
Q  83 tttgaaacataaaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||||||||||||| |||||||||| ||||||  ||| ||| ||||| |||||| ||||    
T  10142335 tttgaaacataaaagtgagtgtaaattattgaggtgggtgtaaaaaatttcataaaacttat 10142274  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 32708963 - 32709013
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  32708963 aaagtgggtgtaaattagtgaggtgagtgcaaacaatttgataaaatttat 32709013  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 12458407 - 12458457
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||||||    
T  12458407 aaagtgagtgtaaattagtgaggtgtgtgtaaacaatttgataaaatttat 12458457  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 32212083 - 32212125
Alignment:
Q  66 atgtttacaattgtttatttgaaacataaaagtgggtgtaaat 108  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  32212083 atgtttacaattgtttatttgaaacataaaattgagtgtaaat 32212125  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 46835184 - 46835234
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    |||||||||||||||||||||| |  ||| |||||||||||||||||||||    
T  46835184 aaagtgggtgtaaattagtgagttgggtgtaaacaatttgataaaatttat 46835234  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 36018062 - 36018009
Alignment:
Q  91 ataaaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||||||||| |||||||||| ||  ||| |||||||||||||||||||||    
T  36018062 ataaaagtgggtgcaaattagtgaagtgggtgtaaacaatttgataaaatttat 36018009  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 26214026 - 26213976
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||||||||||||||||| ||  ||| |||||||||||||||| ||||    
T  26214026 aaagtgggtgtaaattagtgacgtgagtgtaaacaatttgataaaaattat 26213976  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 27787415 - 27787465
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||| || |||||||||||||  ||| |||||||||||||||||||||    
T  27787415 aaagtggatgaaaattagtgaggtgggtgtaaacaatttgataaaatttat 27787465  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 33483532 - 33483582
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||||||    
T  33483532 aaagtgggtgtaaattagtgaggtgggtgtaaacaatttgataaaatttat 33483582  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 20240119 - 20240165
Alignment:
Q  98 tgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||    
T  20240119 tgggtgtaaatcagtgagataggtgcaaacaatttgataaaatttat 20240165  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 22134103 - 22134149
Alignment:
Q  98 tgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||    
T  22134103 tgggtgtaaatcagtgagataggtgcaaacaatttgataaaatttat 22134149  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 22141456 - 22141502
Alignment:
Q  98 tgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||    
T  22141456 tgggtgtaaatcagtgagataggtgcaaacaatttgataaaatttat 22141502  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 10862971 - 10863021
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||||||    
T  10862971 aaagtgggtgtaaattagtgaggtgagtgtaaacaatttgataaaatttat 10863021  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 9792237 - 9792287
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||| ||||||||||||||||  ||| |||||||||||||||||||||    
T  9792237 aaagtggatgtaaattagtgaggtgggtgtaaacaatttgataaaatttat 9792287  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 13293889 - 13293837
Alignment:
Q  91 ataaaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    |||||| || |||||||||||||||||||||| ||| |||||||||||||||||    
T  13293889 ataaaaatgtgtgtaaattagtgaggtatgtgtaaa-aatttgataaaatttat 13293837  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 36911360 - 36911310
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||||||||||| ||||||||  ||| ||| |||||||||||||||||    
T  36911360 aaagtgggtgtaaatcagtgaggtgagtgtaaaaaatttgataaaatttat 36911310  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 5814912 - 5814953
Alignment:
Q  69 tttacaattgtttatttgaaacataaaagtgggtgtaaatta 110  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  5814912 tttacaattgtttatttgaaacaaaaaagtgggtgtaaatta 5814953  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 42885050 - 42885000
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||| ||||    
T  42885050 aaagtgggtgtaaattagtgaggtgagtgtaaacaatttgataaaacttat 42885000  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 43439627 - 43439695
Alignment:
Q  66 atgtttacaattgtttatttgaaacataaaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataa 137  Q
    ||||||||||||||||||||||||||| || |||   ||||||||||||||  |||| ||||||||||||||    
T  43439627 atgtttacaattgtttatttgaaacat-aaggtgaacgtaaattagtgagg--tgtgtaaacaatttgataa 43439695  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 9158773 - 9158823
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||||||||||||||||||||||  ||| || ||||||||||||| ||||    
T  9158773 aaagtgggtgtaaattagtgaggtgagtgtaagcaatttgataaaagttat 9158823  T

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Target: scaffold0538 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0538
Description:

Target: scaffold0538; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 4016 - 4066
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    |||||| |||||||||||||||||  ||| |||||||||||||||| ||||    
T  4016 aaagtgagtgtaaattagtgaggtgagtgtaaacaatttgataaaacttat 4066  T

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Target: scaffold0538; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 8481 - 8531
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    |||||| |||||||||||||||||  ||| |||||||||||||||| ||||    
T  8481 aaagtgagtgtaaattagtgaggtgagtgtaaacaatttgataaaacttat 8531  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 452889 - 452935
Alignment:
Q  98 tgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    ||||| ||||||||||||||  ||| |||||||||||||||||||||    
T  452889 tgggtttaaattagtgaggtgggtgtaaacaatttgataaaatttat 452935  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 30806054 - 30806004
Alignment:
Q  94 aaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    |||||| ||||||||||||||| || ||| ||| |||||||||||||||||    
T  30806054 aaagtgagtgtaaattagtgagataggtgtaaataatttgataaaatttat 30806004  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 27065370 - 27065322
Alignment:
Q  96 agtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaatttat 144  Q
    |||| ||||||| |||||||||  ||| |||||||||||||||||||||    
T  27065370 agtgtgtgtaaaatagtgaggtgagtgtaaacaatttgataaaatttat 27065322  T

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